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gtaagatcaaatattcctttgactccatttttaatttatttacaaaacaatatagtatatttttacaagtataatatattggattcacgcagGACCAGGATACATCCGTTACAAAATCAAACAAATATGATCCCTCCCTTTAATGCTGTTCCCCAACGTACCATACCCCGACCTCAAATGTCTTCTAGATTA
species | Arabidopsis thaliana |
transcript | AT1G77960.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGTAGGCAAAATGAACCTCCCAATATAAGGATGGTTAACAATAATGCTCT GACCAGGATACATCCGTTACAAAATCAAACAAATATGATCCCTCCCTTTAAEST: gi|116391545|gb|EG434137.1|EG434137
genomic: CGTAGGCAAAATGAACCTCCCAATATAAGGATGGTTAACAATAATGCTCTgtaagatcaa ... attcacgcagGACCAGGATACATCCGTTACAAAATCAAACAAATATGATCCCTCCCTTTAA
EST: CGTAGGCAAAATGAACCTCCCAATATAAGGATGGTTAACAATAATGCTCT GACCAGGATACATCCGTTACAAAATCAAACAAATATGATCCCTCCCTTTAAEST: gi|116391580|gb|EG434172.1|EG434172
genomic: CGTAGGCAAAATGAACCTCCCAATATAAGGATGGTTAACAATAATGCTCTgtaagatcaa ... attcacgcagGACCAGGATACATCCGTTACAAAATCAAACAAATATGATCCCTCCCTTTAA
EST: CGTAGGCAAAATGAACCTCCCAATATAAGGATGGTTAACAATAATGCTCT GACCAGGATACATCCGTTACAAAATCAAACAAATATGATCCCTCCCTTTAAEST: gi|116391542|gb|EG434134.1|EG434134
genomic: CGTAGGCAAAATGAACCTCCCAATATAAGGATGGTTAACAATAATGCTCTgtaagatcaa ... attcacgcagGACCAGGATACATCCGTTACAAAATCAAACAAATATGATCCCTCCCTTTAA
EST: CGTAGGCAAAATGAACCTCCCAATATAAGGATGGTTAACAATAATGCTCT GACCAGGATACATCCGTTACAAAATCAAACAAATATGATCCCTCCCTTTAAEST: gi|116391547|gb|EG434139.1|EG434139
genomic: CGTAGGCAAAATGAACCTCCCAATATAAGGATGGTTAACAATAATGCTCTgtaagatcaa ... attcacgcagGACCAGGATACATCCGTTACAAAATCAAACAAATATGATCCCTCCCTTTAA
EST: CGTAGGCAAAATGAACCTCCCAATATAAGGATGGTTAACAATAATGCTCT GACCAGGATACATCCGTTACAAAATCAAACAAATATGATCCCTCCCTTTAAEST: gi|116391557|gb|EG434149.1|EG434149
genomic: CGTAGGCAAAATGAACCTCCCAATATAAGGATGGTTAACAATAATGCTCTgtaagatcaa ... attcacgcagGACCAGGATACATCCGTTACAAAATCAAACAAATATGATCCCTCCCTTTAA
EST: CGTAGGCAAAATGAACCTCCCAATATAAGGATGGTTAACAATAATGCTCT GACCAGGATACATCCGTTACAAAATCAAACAAATATGATCCCTCCCTTTAA
genomic: CGTAGGCAAAATGAACCTCCCAATATAAGGATGGTTAACAATAATGCTCTgtaagatcaa ... attcacgcagGACCAGGATACATCCGTTACAAAATCAAACAAATATGATCCCTCCCTTTAA
atttacaaaacaatatagtatatttttacaagtataatatattggattcacgcagGACCAGGATACATCCGTTACAAAATCAAACAAATATGATCCCTCCCTTTAATGCTGTTCCCCAACGTACCATACCCCGACCTCAAATGTCTTCTAGATTA
aaaacaatatagtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatcaaatattcctttgactccatttttaatttatttacaaaacaatatagtatatttttacaagtataatatattggattcacgcagGACCAGGATACATCCGTTACAAAATCAAACAAATATGATCCCTCCCTTTAATGCTGTTCCCCAACGTACCATACCCCGACCTCAAATGTCTTCTAGATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT