1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ccaaaatgagactagtactactactcaaatgtaacactttgtatgcttataacattgatctataaagttttcgtaagagtatcattttcatgaaatatagGCCACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAGTTCTTCCTTTGGCATGTATCCACAGCAACCGCGCCCACCAGTGTTTGTCCGTAGG
species | Arabidopsis thaliana |
transcript | AT1G77960.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTATGGGATCCGCTAG GCCACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAGTTCTTCEST: gi|116391580|gb|EG434172.1|EG434172
genomic: CGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTATGGGATCCGCTAGgtacattatc ... tgaaatatagGCCACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAGTTCTTC
EST: CGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTATGGGATCCGCTAG GCCACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAGTTCTTCEST: gi|116391542|gb|EG434134.1|EG434134
genomic: CGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTATGGGATCCGCTAGgtacattatc ... tgaaatatagGCCACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAGTTCTTC
EST: CGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTATGGGATCCGCTAG GCCACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAGTTCTTCEST: gi|116391557|gb|EG434149.1|EG434149
genomic: CGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTATGGGATCCGCTAGgtacattatc ... tgaaatatagGCCACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAGTTCTTC
EST: CGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTATGGGATCCGCTAG GCCACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAGTTCTTC
genomic: CGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTATGGGATCCGCTAGgtacattatc ... tgaaatatagGCCACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAGTTCTTC
cttataacattgatctataaagttttcgtaagagtatcattttcatgaaatatagGCCACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAGTTCTTCCTTTGGCATGTATCCACAGCAACCGCGCCCACCAGTGTTTGTCCGTAGG
ttttcat CT-rich tract
attttcatgaaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaaaatgagactagtactactactcaaatgtaacactttgtatgcttataacattgatctataaagttttcgtaagagtatcattttcatgaaatatagGCCACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAGTTCTTCCTTTGGCATGTATCCACAGCAACCGCGCCCACCAGTGTTTGTCCGTAGG
ccaaaat
- - - - - - - - - - - actcaaa
- - - - - - - - - - - - - - - - - - - - - - - -tataaca