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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagattaattgatttacaaacacttctatcatataatagaaaactctattttttttacataaactcatactaataaaaaaaatgatgaattgatgcagGATACCTCAACACCGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTATGGGATCCGCTAG

Basic information

species Arabidopsis thaliana
transcript AT1G77960.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116391561|gb|EG434153.1|EG434153
EST:     GTGACGAATTCTCCACTTCAACTTCAAAACCGTTTTCTTCCAGTACCTTT                         GATACCTCAACACCGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTAT
genomic: GTGACGAATTCTCCACTTCAACTTCAAAACCGTTTTCTTCCAGTACCTTTgtatgagatt ... attgatgcagGATACCTCAACACCGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTAT
EST: gi|116391580|gb|EG434172.1|EG434172
EST:     GTGACGAATTCCCCACTTCAACTTCAAAACCGTTTTCTTCCAGTACCTTT                         GATACCTCAACACCGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTAT
genomic: GTGACGAATTCTCCACTTCAACTTCAAAACCGTTTTCTTCCAGTACCTTTgtatgagatt ... attgatgcagGATACCTCAACACCGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTAT
EST: gi|116391542|gb|EG434134.1|EG434134
EST:     GTGACGAATTCTCCACTTCAACTTCAAAACCGTTTTCTTCCAGTACCTTT                         GATACCTCAACACCGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTAT
genomic: GTGACGAATTCTCCACTTCAACTTCAAAACCGTTTTCTTCCAGTACCTTTgtatgagatt ... attgatgcagGATACCTCAACACCGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTAT
EST: gi|116391557|gb|EG434149.1|EG434149
EST:     GTGACGAATTCTCCACTTCAACTTCAAAACCGTTTTCTTCCAGTACCTTT                         GATACCTCAACACCGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTAT
genomic: GTGACGAATTCTCCACTTCAACTTCAAAACCGTTTTCTTCCAGTACCTTTgtatgagatt ... attgatgcagGATACCTCAACACCGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctattttttttacataaactcatactaataaaaaaaatgatgaattgatgcagGATACCTCAACACCGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTATGGGATCCGCTAG
     ttttttttacataaac  TA-rich tract