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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaagttataatctaatcgacttagcacaagagagaacttaagtttctgtgttcttatatatgtttttgattgctgcatttgaaaactctaattctctctttttatacctcattgttatagGCAACATGGCGGTATGCAAACATCGGTGAATCAGTCTCCATTGAGGTTTAGGTTACCCAACATTAACAATCGTCAGGCCCCTGTACGTCCAAACGCAAAC

Basic information

species Arabidopsis thaliana
transcript AT1G77960.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116391561|gb|EG434153.1|EG434153
EST:     CCCCAACGTACCATACCCCGACCTCAAATGTCTTCTAGATTATTTACCAG                         GCAACATGGCGGTATGCAAACATCGGTGAATCAGTCTCCATTGAGGTTTAG
genomic: CCCCAACGTACCATACCCCGACCTCAAATGTCTTCTAGATTATTTACCAGgtaacaagtt ... attgttatagGCAACATGGCGGTATGCAAACATCGGTGAATCAGTCTCCATTGAGGTTTAG
EST: gi|116391545|gb|EG434137.1|EG434137
EST:     CCCCAACGTACCATACCCCGACCTCAAATGTCTTCTAGATTATTTACCAG                         GCAACATGGCGGTATGCAAACATCGGTGAATCAGTCTCCATTGAGGTTTAG
genomic: CCCCAACGTACCATACCCCGACCTCAAATGTCTTCTAGATTATTTACCAGgtaacaagtt ... attgttatagGCAACATGGCGGTATGCAAACATCGGTGAATCAGTCTCCATTGAGGTTTAG
EST: gi|116391580|gb|EG434172.1|EG434172
EST:     CCCCAACGTACCATACCCCGACCTCAAATGTCTTCTAGATTATTTACCAG                         GCAACATGGCGGTATGCAAACATCGGTGAATCATTCTCCATTGAGGTTTAG
genomic: CCCCAACGTACCATACCCCGACCTCAAATGTCTTCTAGATTATTTACCAGgtaacaagtt ... attgttatagGCAACATGGCGGTATGCAAACATCGGTGAATCAGTCTCCATTGAGGTTTAG
EST: gi|116391542|gb|EG434134.1|EG434134
EST:     CCCCAACGTACCATACCCCGACCTCAAATGTCTTCTAGATTATTTACCAG                         GCAACATGGCGGTATGCAAACATCGGTGAATCAGTCTCCA
genomic: CCCCAACGTACCATACCCCGACCTCAAATGTCTTCTAGATTATTTACCAGgtaacaagtt ... attgttatagGCAACATGGCGGTATGCAAACATCGGTGAATCAGTCTCCA
EST: gi|116391547|gb|EG434139.1|EG434139
EST:     CCCCAACGTACCATACCCCGACCTCAAATGTCTTCTAGATTATTTACCAG                         GCAACATGGCGGTATGCAAACATCGGTGAATCAGTCTCCATTGAGGTTTAG
genomic: CCCCAACGTACCATACCCCGACCTCAAATGTCTTCTAGATTATTTACCAGgtaacaagtt ... attgttatagGCAACATGGCGGTATGCAAACATCGGTGAATCAGTCTCCATTGAGGTTTAG
EST: gi|116391557|gb|EG434149.1|EG434149
EST:     CCCCAACGTACCATACCCCGACCTCAAATGTCTTCTAGATTATTTACCAG                         GCAACATGGCGGTATGCAAACATCGGTGAATCAGTCTCCATTGAGGTTTAG
genomic: CCCCAACGTACCATACCCCGACCTCAAATGTCTTCTAGATTATTTACCAGgtaacaagtt ... attgttatagGCAACATGGCGGTATGCAAACATCGGTGAATCAGTCTCCATTGAGGTTTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgattgctgcatttgaaaactctaattctctctttttatacctcattgttatagGCAACATGGCGGTATGCAAACATCGGTGAATCAGTCTCCATTGAGGTTTAGGTTACCCAACATTAACAATCGTCAGGCCCCTGTACGTCCAAACGCAAAC
                    ctctaat  putative branch site (score: 3)
                          ttctctctttttatac  CT-rich tract
                               tctttttata  TA-rich tract