Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATACCTCAACACCGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTATGGGATCCGCTAGgtacattatctaaaatttattccatattagtatatccgctaaatatagtagtcactacatatctgaaatggtttatagagcctctgtttatcaaatacct...

Basic information

species Arabidopsis thaliana
transcript AT1G77960.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116391561|gb|EG434153.1|EG434153
EST:     CGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTATGGGATCCGCTAG                         GCCACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAGTTCTTC
genomic: CGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTATGGGATCCGCTAGgtacattatc ... tgaaatatagGCCACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAGTTCTTC
EST: gi|116391580|gb|EG434172.1|EG434172
EST:     CGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTATGGGATCCGCTAG                         GCCACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAGTTCTTC
genomic: CGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTATGGGATCCGCTAGgtacattatc ... tgaaatatagGCCACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAGTTCTTC
EST: gi|116391542|gb|EG434134.1|EG434134
EST:     CGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTATGGGATCCGCTAG                         GCCACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAGTTCTTC
genomic: CGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTATGGGATCCGCTAGgtacattatc ... tgaaatatagGCCACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAGTTCTTC
EST: gi|116391557|gb|EG434149.1|EG434149
EST:     CGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTATGGGATCCGCTAG                         GCCACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAGTTCTTC
genomic: CGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTATGGGATCCGCTAGgtacattatc ... tgaaatatagGCCACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAGTTCTTC