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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaaaacgttctttggagtggtttaattattattttttactatattatattttaaggttattctttatttactttttttcagAACCAAACAGAGATTGGTCAACAAGTGAGGCAAGCAAATAATGGATTTGCACATCCAACTGTGACGAATTCTCCACTTCAACTTCAAAACCGTTTTCTTC

Basic information

species Arabidopsis thaliana
transcript AT1G77960.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116391561|gb|EG434153.1|EG434153
EST:     TATCAAACATGTTGAATACTATTCAGCAGGAGTCGAGTGTTTTTACGAGG                         AACCAAACAGAGATTGGTCAACAAGTGAGGCAAGCAAATAATGGATTTGCA
genomic: TATCAAACATGTTGAATACTATTCAGCAGGAGTCGAGTGTTTTTACAAGGgtagaaaacg ... tttttttcagAACCAAACAGAGATTGGTCAACAAGTGAGGCAAGCAAATAATGGATTTGCA
EST: gi|116391580|gb|EG434172.1|EG434172
EST:     TATCAAACATGTTGAATACTATTCAGCAGGAGTCGAGTGTTTTTACAAGG                         AACCAAACAGAGATTGGTCAACAAGTGAGGCAAGCAAATAATGGATTTGCA
genomic: TATCAAACATGTTGAATACTATTCAGCAGGAGTCGAGTGTTTTTACAAGGgtagaaaacg ... tttttttcagAACCAAACAGAGATTGGTCAACAAGTGAGGCAAGCAAATAATGGATTTGCA
EST: gi|116391542|gb|EG434134.1|EG434134
EST:     TATCAAACATGTTGAATACTATTCAGCAGGAGTCGAGTGTTTTTACAAGG                         AACCAAACAGAGATTGGTCAACAAGTGAGGCAAGCAAATAATGGATTTGCA
genomic: TATCAAACATGTTGAATACTATTCAGCAGGAGTCGAGTGTTTTTACAAGGgtagaaaacg ... tttttttcagAACCAAACAGAGATTGGTCAACAAGTGAGGCAAGCAAATAATGGATTTGCA
EST: gi|116391557|gb|EG434149.1|EG434149
EST:     TATCAAACATGTTGAATACTATTCAGCAGGAGTCGAGTGTTTTTACGAGG                         AACCAAACAGAGATTGGTCAACAAGTGAGGCAAGCAAATAATGGATTTGCA
genomic: TATCAAACATGTTGAATACTATTCAGCAGGAGTCGAGTGTTTTTACAAGGgtagaaaacg ... tttttttcagAACCAAACAGAGATTGGTCAACAAGTGAGGCAAGCAAATAATGGATTTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattattttttactatattatattttaaggttattctttatttactttttttcagAACCAAACAGAGATTGGTCAACAAGTGAGGCAAGCAAATAATGGATTTGCACATCCAACTGTGACGAATTCTCCACTTCAACTTCAAAACCGTTTTCTTC
                              ttattctttatttact  CT-rich tract
     ttttttactatattat  TA-rich tract