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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGATACCAGTCCGACAACTGGAAGTGTTAACACTACTGTAATTGAGAAACAACGGTTGGCTAAGTCATCTCTCGCTTTCAATTGTAAAACgtaagattttcccatcatcaaaaaatttcaaattctggattcatatagaagctaagtttagttatctgtggttaggatagtcataaaagctggttagataacgaatataggaatgaatgcagtcctgagattacatgttttcggtatttcacctgaatccaatgttcttacttgtgacag

Basic information

species Arabidopsis thaliana
transcript AT1G17280.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084034|gb|DR379793.1|DR379793
EST:     ATTGAGAAACAACGGTTGGCTAAGTCATCTCTCGCTTTCAATTGTAAAAC                         CCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAGAGAAGTACCAACCAGC
genomic: ATTGAGAAACAACGGTTGGCTAAGTCATCTCTCGCTTTCAATTGTAAAACgtaagatttt ... cttgtgacagCCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAGAGAAGTA-CAACCAGC
EST: gi|164234580|gb|ES009035.1|ES009035
EST:     CGCTTTCAATTGTAAAAC                         CCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAGAGAAGTACAACCAGCA
genomic: CGCTTTCAATTGTAAAACgtaagatttt ... cttgtgacagCCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAGAGAAGTACAACCAGCA
EST: gi|86084408|gb|DR380167.1|DR380167
EST:     TCAATTGTAAAAC                         CCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAGAGAAGTACAACCAGCA
genomic: TCAATTGTAAAACgtaagatttt ... cttgtgacagCCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAGAGAAGTACAACCAGCA
EST: gi|164071297|gb|EL992802.1|EL992802
EST:     ATTGAGAAACAACGGTTGGCTAAGTCATCTCTCGCTTTCAATTGTAAAAC                         CCCAGCATTTCGAAAGCTATTTCCAG
genomic: ATTGAGAAACAACGGTTGGCTAAGTCATCTCTCGCTTTCAATTGTAAAACgtaagatttt ... cttgtgacagCCCAGCATTTCGAAAGCTATTTCCAG