1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagattttcccatcatcaaaaaatttcaaattctggattcatatagaagctaagtttagttatctgtggttaggatagtcataaaagctggttagataacgaatataggaatgaatgcagtcctgagattacatgttttcggtatttcacctgaatccaatgttcttacttgtgacagCCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAGAGAAGTACAACCAGCAGCAACTAGCTGAGCAAGCTACCACACAACTGACAACACCAGAGTCTCCT
species | Arabidopsis thaliana |
transcript | AT1G17280.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTGAGAAACAACGGTTGGCTAAGTCATCTCTCGCTTTCAATTGTAAAAC CCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAGAGAAGTACCAACCAGCEST: gi|164234580|gb|ES009035.1|ES009035
genomic: ATTGAGAAACAACGGTTGGCTAAGTCATCTCTCGCTTTCAATTGTAAAACgtaagatttt ... cttgtgacagCCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAGAGAAGTA-CAACCAGC
EST: CGCTTTCAATTGTAAAAC CCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAGAGAAGTACAACCAGCAEST: gi|86084408|gb|DR380167.1|DR380167
genomic: CGCTTTCAATTGTAAAACgtaagatttt ... cttgtgacagCCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAGAGAAGTACAACCAGCA
EST: TCAATTGTAAAAC CCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAGAGAAGTACAACCAGCAEST: gi|164071297|gb|EL992802.1|EL992802
genomic: TCAATTGTAAAACgtaagatttt ... cttgtgacagCCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAGAGAAGTACAACCAGCA
EST: ATTGAGAAACAACGGTTGGCTAAGTCATCTCTCGCTTTCAATTGTAAAAC CCCAGCATTTCGAAAGCTATTTCCAG
genomic: ATTGAGAAACAACGGTTGGCTAAGTCATCTCTCGCTTTCAATTGTAAAACgtaagatttt ... cttgtgacagCCCAGCATTTCGAAAGCTATTTCCAG
tgagattacatgttttcggtatttcacctgaatccaatgttcttacttgtgacagCCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAGAGAAGTACAACCAGCAGCAACTAGCTGAGCAAGCTACCACACAACTGACAACACCAGAGTCTCCT
ttcttac putative branch site (score: 2)
ttcttactt CT-rich tract
atgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattttcccatcatcaaaaaatttcaaattctggattcatatagaagctaagtttagttatctgtggttaggatagtcataaaagctggttagataacgaatataggaatgaatgcagtcctgagattacatgttttcggtatttcacctgaatccaatgttcttacttgtgacagCCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAGAGAAGTACAACCAGCAGCAACTAGCTGAGCAAGCTACCACACAACTGACAACACCAGAGTCTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT