1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gggagtttcagtctttctattattactgcatttagtatgttaaaaagggtagcttgatctcttactaaaatagagttaaactattggattaatcttacagATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG
species | Arabidopsis thaliana |
transcript | AT1G17280.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGC ATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAGEST: gi|116477746|gb|EG520338.1|EG520338
genomic: AGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGCgtaagccttc ... aatcttacagATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG
EST: AGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGC ATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAGEST: gi|86056971|gb|DR352728.1|DR352728
genomic: AGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGCgtaagccttc ... aatcttacagATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG
EST: AGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGC ATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAGEST: gi|125117165|gb|EL166417.1|EL166417
genomic: AGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGCgtaagccttc ... aatcttacagATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG
EST: TTCTCGAGTGGC ATCATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG
genomic: TTCTCGAGTGGCgtaagccttc ... aatcttacagATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG
agggtagcttgatctcttactaaaatagagttaaactattggattaatcttacagATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG
taaaatagagttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggagtttcagtctttctattattactgcatttagtatgttaaaaagggtagcttgatctcttactaaaatagagttaaactattggattaatcttacagATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - taaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactat