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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATACTTACAGGACTTCTCTCATTTATGgtaagctcactgtaggttctacatatttatggacatcttgtttgaaaattctcatattcttatattgtaatggtttattagcttagatatgaatattcaaaaaggaagtctattttttcttttctgttctcaagctttctctaaacgttttccttgcggcgcag

Basic information

species Arabidopsis thaliana
transcript AT1G17280.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124728404|gb|EH819806.1|EH819806
EST:     TCTCATTTATG                         ATGGATACCAGTCCGACAACTGGAAGTGTTAACACTACTGTAATTGAGAAA
genomic: TCTCATTTATGgtaagctcac ... tgcggcgcagATGGATACCAGTCCGACAACTGGAAGTGTTAACACTACTGTAATTGAGAAA
EST: gi|86056972|gb|DR352729.1|DR352729
EST:     CATACTTACAGGACTTCTCTCATTTATG                         ATGGATACCAGTCCGACAACTGGAAGTGTTAACACTACTGTAATTGAGAAA
genomic: CATACTTACAGGACTTCTCTCATTTATGgtaagctcac ... tgcggcgcagATGGATACCAGTCCGACAACTGGAAGTGTTAACACTACTGTAATTGAGAAA
EST: gi|164223890|gb|ES033780.1|ES033780
EST:     CATACTTACAGGACTTCTCTCATTTATG                         ATGGATACCAGTCCGACAACTGGAAGTGTTAACACTACTGTAA
genomic: CATACTTACAGGACTTCTCTCATTTATGgtaagctcac ... tgcggcgcagATGGATACCAGTCCGACAACTGGAAGTGTTAACACTACTGTAA
EST: gi|116477746|gb|EG520338.1|EG520338
EST:     CATACTTACAGGACTTCTCTCATTTATG                         GTGGATACCAGTCCGACAACTGGAAGTGTTAACACTACTGTAATTGAGAAA
genomic: CATACTTACAGGACTTCTCTCATTTATGgtaagctcac ... tgcggcgcagATGGATACCAGTCCGACAACTGGAAGTGTTAACACTACTGTAATTGAGAAA