Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagattctttctttacttttggaagatgacaatcgatatacccgttgataaccaactttttttcatgaatgcagCATACTTACAGGACTTCTCTCATTTATG

Basic information

species Arabidopsis thaliana
transcript AT1G17280.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86056972|gb|DR352729.1|DR352729
EST:     TTCATCCAGAAAGCTGGAATCCGATGTGGTCTGTATCAAG                         CATACTTACAGGACTTCTCTCATTTATG
genomic: TTCATCCAGAAAGCTGGAATCCGATGTGGTCTGTATCAAGgtatagattc ... atgaatgcagCATACTTACAGGACTTCTCTCATTTATG
EST: gi|164223890|gb|ES033780.1|ES033780
EST:     GAATCCGATGTGGTCTGTATCAAG                         CATACTTACAGGACTTCTCTCATTTATG
genomic: GAATCCGATGTGGTCTGTATCAAGgtatagattc ... atgaatgcagCATACTTACAGGACTTCTCTCATTTATG
EST: gi|116477746|gb|EG520338.1|EG520338
EST:     TTCATCCAGAAAGCTGGAATCCGATGTGGTCTGTATCAAG                         CATACTTACAGGACTTCTCTCATTTATG
genomic: TTCATCCAGAAAGCTGGAATCCGATGTGGTCTGTATCAAGgtatagattc ... atgaatgcagCATACTTACAGGACTTCTCTCATTTATG
EST: gi|86056971|gb|DR352728.1|DR352728
EST:     TTCATCCAGAAAGCTGGAATCCGATGTGGTCTGTATCAAG                         CATACTTACAGGACTTCTCTCATTTATGATGGATACCA
genomic: TTCATCCAGAAAGCTGGAATCCGATGTGGTCTGTATCAAGgtatagattc ... atgaatgcagCATACTTACAGGACTTCTCTCATTTATGATGGATACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaagatgacaatcgatatacccgttgataaccaactttttttcatgaatgcagCATACTTACAGGACTTCTCTCATTTATG
                          tgataac  putative branch site (score: 2)
                                    ctttttttcat  putative PPT
                                     tttttttcatgaat  TA-rich tract