1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgttccaatggttcctccaaattcagtctcaacattactcttacctcattttttgtccagttttttaatgaaccaaatctttttctgtttgcctcagAATGACTACACCAAATGGTCGATTCATGACACAGAAGAAAATTTGTTTATCTATGAGTGATT
species | Arabidopsis thaliana |
transcript | AT1G17280.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAGCCACCAGGGATTAC AATGACTACACCAAATGGTCGATTCATGACACAGAAGAAAATTTGTTTATCEST: gi|116477746|gb|EG520338.1|EG520338
genomic: GGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAGCCACCAGGGATTACgtatgttcca ... tttgcctcagAATGACTACACCAAATGGTCGATTCATGACACAGAAGAAAATTTGTTTATC
EST: GGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAGCCACCAGGGATTAC AATGACTACACCAAATGGTCGATTCATGACACAGAAGAAAATTTGTTTATCEST: gi|86056971|gb|DR352728.1|DR352728
genomic: GGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAGCCACCAGGGATTACgtatgttcca ... tttgcctcagAATGACTACACCAAATGGTCGATTCATGACACAGAAGAAAATTTGTTTATC
EST: GGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAGCCACCAGGGATTAC AATGACTACACCAAATGGTCGATTCATGACACAGAAGAAAATTTGTTTATCEST: gi|124916191|gb|EH990065.1|EH990065
genomic: GGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAGCCACCAGGGATTACgtatgttcca ... tttgcctcagAATGACTACACCAAATGGTCGATTCATGACACAGAAGAAAATTTGTTTATC
EST: GGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAGCCACCAGGGATTAC AATGACTACACCAAATGGTCGATTCATGAEST: gi|125094927|gb|EL152249.1|EL152249
genomic: GGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAGCCACCAGGGATTACgtatgttcca ... tttgcctcagAATGACTACACCAAATGGTCGATTCATGA
EST: GTTTCCTCCCGAGTATCCTTACAAGCCACCAGGGATTAC AATGACTACACCAAATGGTCGATTCATGACACAGAAGAAAATTTGTTTATC
genomic: GTTTCCTCCCGAGTATCCTTACAAGCCACCAGGGATTACgtatgttcca ... tttgcctcagAATGACTACACCAAATGGTCGATTCATGACACAGAAGAAAATTTGTTTATC
acctcattttttgtccagttttttaatgaaccaaatctttttctgtttgcctcagAATGACTACACCAAATGGTCGATTCATGACACAGAAGAAAATTTGTTTATCTATGAGTGATT
ttttaat putative branch site (score: 3)
tctttttctgtttgcc putative PPT
agttttttaatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttccaatggttcctccaaattcagtctcaacattactcttacctcattttttgtccagttttttaatgaaccaaatctttttctgtttgcctcagAATGACTACACCAAATGGTCGATTCATGACACAGAAGAAAATTTGTTTATCTATGAGTGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA