1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tctatatgtgaatgttttcttggttttggtttagagtaagtttcatattttcttttgtttctttgggggttatttaatatgttctgtttttggcctttagGAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGC
species | Arabidopsis thaliana |
transcript | AT1G17280.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAAGGCCTGTATAAAACGTCTTCAAAAGGAATATAGAGCACTTTGCAAG GAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGEST: gi|116477746|gb|EG520338.1|EG520338
genomic: AAAAGGCCTGTATAAAACGTCTTCAAAAGGAATATAGAGCACTTTGCAAGgtacactctc ... tggcctttagGAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAG
EST: AAAAGGCCTGTATAAAACGTCTTCAAAAGGAATATAGAGCACTTTGCAAG GAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGEST: gi|86056971|gb|DR352728.1|DR352728
genomic: AAAAGGCCTGTATAAAACGTCTTCAAAAGGAATATAGAGCACTTTGCAAGgtacactctc ... tggcctttagGAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAG
EST: AAAAGGCCTGTATAAAACGTCTTCAAAAGGAATATAGAGCACTTTGCAAG GAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAG
genomic: AAAAGGCCTGTATAAAACGTCTTCAAAAGGAATATAGAGCACTTTGCAAGgtacactctc ... tggcctttagGAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAG
tattttcttttgtttctttgggggttatttaatatgttctgtttttggcctttagGAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGC
atttaat putative branch site (score: 4)
ttctgttttt putative PPT
ttatttaatatgttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctatatgtgaatgttttcttggttttggtttagagtaagtttcatattttcttttgtttctttgggggttatttaatatgttctgtttttggcctttagGAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGC
- - - - - - - - - - -ggttttg