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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGTTATGCTATTTTAAAAAGGCACCCATTTTTCAAGGGGGTTGACTGGGATAACTTGAGGGCACAAATTCCTCCAAAACTTGCTCCAGAACCTGGGgtatgacttccattgctttgctctttgaaatgttatttatggaggataagaaaaggaaccttcattcttatccttgttatttgttgaacataaagtttctaactcttttgtaattttcacttgtag

Basic information

species Glycine max
transcript GLYMA20G33140.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33140.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G10540.1 (Arabidopsis thaliana), 5'ss of exon 8
TGATGGTTATGCTATTTTAAAAAGGCACCCATTTTTCAAGGGGGTTGACTGGGATAACTTGAGGGCACAAATTCCTCCAAAACTTGCTCCAGAACCTGGGgtatgacttccattgctttgctctttgaaatgttatttatggaggataagaaaaggaaccttcattcttatccttgttatttgttgaacataaagtttctaactcttttgtaattttcacttgtag
 || ||||||| |  | | || || || || || |||||||| ||||||||| | ||| | ||| |||||| |||||||||||| |||||||| |||| |||||        || | ||   ||||     |||| || |    |       ||  ||  | |  |||| ||||| |  |  ||      ||   |||  |                         
AGAAGGTTATGATTCTCTCAAGAGACATCCTTTCTTCAAGGGAGTTGACTGGAAGAACCTAAGGTCACAAACTCCTCCAAAACTAGCTCCAGATCCTGCGgtat--------ttacctt---cttta----gttacttctaattgccgcaccaaaaaaattcccgtcttgtccttctcttgagtcagttttatctttttcag------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208165474|gb|GD964498.1|GD964498
EST:     TTGCTCCAGAACCTGGG                         ACTCAGTCGCCTTGTTGGTCTTGTATGATGTTCATGACTCATCTTGGAGTC
genomic: TTGCTCCAGAACCTGGGgtatgacttc ... tcacttgtagACTCAGTCGCC-TG-TGG-C-TG-ATGATGTTCATGACTCATCTTGGAGTC
EST: gi|193453399|gb|FK418139.1|FK418139
EST:     GGGATAACTTGAGGGCACAAATTCCTCCAAAACTTGCTCCAGAACCTGGG                         ACTCAGTCGCCTGTGGCTGATGATGTTCATGACTCATCTTGGAGTCCTTCT
genomic: GGGATAACTTGAGGGCACAAATTCCTCCAAAACTTGCTCCAGAACCTGGGgtatgacttc ... tcacttgtagACTCAGTCGCCTGTGGCTGATGATGTTCATGACTCATCTTGGAGTCCTTCT