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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTTGCCTTCAACCAGCAGGCCGGCACGAACTTCGGCCCCACCACAGTGGACATGGGCGCGCCCGCACACAGCATTTACACAACCGACATTGCCGTCAgtgagtggagtgtgcacagggcatcctgcaggcggggctaaaaaatgaaacgggcggatgggcggcacgtggtggaaatggattgagcgtgtactggttgggagcgtgtacttggccctcaatacaatgacggtagccgacctgaccgatgccatggctgcaatttatcacccacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09496
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10784361|gb|AV641033.1|AV641033
EST:     GGACATGGGCGCGCCCGCACACAGCATTTACACAACCGACATTGCCGTCA                         ATAGAAACTACAGCGCCCCTTCGGGTACCTCTTTCGCTACCCCCATGGTGG
genomic: GGACATGGGCGCGCCCGCACACAGCATTTACACAACCGACATTGCCGTCAgtgagtggag ... tcacccacagATAGAAACTACAGCGCCCCTTCGGGTACCTCTTTCGCTACCCCCATGGTGG
EST: gi|49468810|gb|BP096671.1|BP096671
EST:     GGACATGGGCGCGCCCGCACACAGCATTTACACAACCGACATTGCCGTCA                         ATAGAAACTACAGCGCCCCTTCGGGTACCTCTTTCGCTACCCCCATGGTGG
genomic: GGACATGGGCGCGCCCGCACACAGCATTTACACAACCGACATTGCCGTCAgtgagtggag ... tcacccacagATAGAAACTACAGCGCCCCTTCGGGTACCTCTTTCGCTACCCCCATGGTGG
EST: gi|22068513|gb|BQ818425.1|BQ818425
EST:     GGACATGGGCGCGCCCGCACACAGCATTTACACAACCGACATTGCCGTCA                         ATAGAAACTACAGCGCCCCTTCGGGTACCTATTTCGCTACCCCCA
genomic: GGACATGGGCGCGCCCGCACACAGCATTTACACAACCGACATTGCCGTCAgtgagtggag ... tcacccacagATAGAAACTACAGCGCCCCTTCGGGTACCTCTTTCGCTACCCCCA
EST: gi|6549961|gb|AV395745.1|AV395745
EST:     GGACATGGGCGCGCCCGCACACAGCATTTACACAACCGACATTGCCGTCA                         ATAGAAACTACAGCGCCCCTTCGGGTACCTCTTTCGCTACCCCCATGGTGG
genomic: GGACATGGGCGCGCCCGCACACAGCATTTACACAACCGACATTGCCGTCAgtgagtggag ... tcacccacagATAGAAACTACAGCGCCCCTTCGGGTACCTCTTTCGCTACCCCCATGGTGG