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...atgtttattttcttatttgctttcatatttattgcaatacatggaacccagtatttttagtttaatactatatccatgccttgtatttaattggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG
species | Zea mays |
transcript | GRMZM5G806449_T03 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|211287654|gb|FL367858.1|FL367858
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|62550294|gb|DN830714.1|DN830714
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|67018787|gb|CO447536.1|CO447536
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|8368856|gb|BE051801.1|BE051801
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|211462691|gb|FL336836.1|FL336836
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|211123447|gb|FL321141.1|FL321141
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|67026810|gb|CO455559.1|CO455559
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|211135367|gb|FL349825.1|FL349825
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGANCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|32919439|gb|CF024251.1|CF024251
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|32794339|gb|CD946575.1|CD946575
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|24934507|gb|CA452725.1|CA452725
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|211396212|gb|FL320934.1|FL320934
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|47961736|gb|CN844445.1|CN844445
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|211460047|gb|FL333663.1|FL333663
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|51593048|gb|CV072194.1|CV072194
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|47962782|gb|CN845491.1|CN845491
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|33942527|gb|CF349127.1|CF349127
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|211540781|gb|FL336428.1|FL336428
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|108823920|gb|EC277928.1|EC277928
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|148937230|gb|EC881412.2|EC881412
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: TGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|211318389|gb|FL341246.1|FL341246
genomic: TGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGAEST: gi|24934516|gb|CA452734.1|CA452734
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
EST: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAG GGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
genomic: AACTGATAAAGGAGAAGAGCTCATTGCAGATGTTGTCCTATTTGCGACAGgtatttggga ... ttggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGA
acccagtatttttagtttaatactatatccatgccttgtatttaattggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG
atttaat putative branch site (score: 730)
tatttttagtttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtttattttcttatttgctttcatatttattgcaatacatggaacccagtatttttagtttaatactatatccatgccttgtatttaattggttgcagGGCGCACACCAAACTCCCAGAGACTGAACTTGCAAGCTGCAGGCGTTGAGATTGACCGGGTTGGAGCCATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG