1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtttgttattcttctttatctgtgaagacaaaacctcctctaaggtttcttgttcttagagtttaggctacatttatgtgcagATAATCGAACCATCAAAGGAAGTCGCGTTCCAACTTCTGGATAGTGGTCGTCAAAATATCCGGGTAAGAAAACTTGGGCTTGATATGTTGAGACAGCTCT
species | Arabidopsis thaliana |
transcript | AT3G12010.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGCTTACAGTAAGCGATTTGCAGAACTTGTCGCTATTCACCACAAACAAG ATAATCGAACCATCAAAGGAAGTCGCGTTCCAACTTCTGGATAAGTGGTCGEST: gi|125238898|gb|EL252983.1|EL252983
genomic: AGCTTACAGTAAGCGATTTGCAGAAC-TGTCGCTATTCACCACAAACAAGgtttgttatt ... ttatgtgcagATAATCGAACCATCAAAGGAAGTCGCGTTCCAACTTCTGGATA-GTGGTCG
EST: TAAGCGATTTGCAGAACTGTCGCTATTCACCACAAACAAG ATAATCGAACCATCAAAGGAAGTCGCGTTCCAACTTCTGGATAGTGGTCGTEST: gi|86087632|gb|DR383391.1|DR383391
genomic: TAAGCGATTTGCAGAACTGTCGCTATTCACCACAAACAAGgtttgttatt ... ttatgtgcagATAATCGAACCATCAAAGGAAGTCGCGTTCCAACTTCTGGATAGTGGTCGT
EST: TAGCTTACAGTAAGCGATTTGCAGAACTGTCGCTATTCACCACAAACAAG ATAATCGAACCATCAAAGGAAGTCGCGTTCCAACTTCTGGATAGTGGTCGT
genomic: TAGCTTACAGTAAGCGATTTGCAGAACTGTCGCTATTCACCACAAACAAGgtttgttatt ... ttatgtgcagATAATCGAACCATCAAAGGAAGTCGCGTTCCAACTTCTGGATAGTGGTCGT
caaaacctcctctaaggtttcttgttcttagagtttaggctacatttatgtgcagATAATCGAACCATCAAAGGAAGTCGCGTTCCAACTTCTGGATAGTGGTCGTCAAAATATCCGGGTAAGAAAACTTGGGCTTGATATGTTGAGACAGCTCT
tacatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttattcttctttatctgtgaagacaaaacctcctctaaggtttcttgttcttagagtttaggctacatttatgtgcagATAATCGAACCATCAAAGGAAGTCGCGTTCCAACTTCTGGATAGTGGTCGTCAAAATATCCGGGTAAGAAAACTTGGGCTTGATATGTTGAGACAGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC