1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAAATCCGGAGACGTGGTCTACAAGTAGCTGTTGCTGGTATTCCCAAGACTATTGATAATGATATAGCGgtaatttttggccacttctacttgttctcttttcagcttgcatagatgcttttgctgcatacctcttgatttggaagactgtagtgcagagacctgtactatgctgattatttgtatatatatggttag
species | Zea mays |
transcript | GRMZM5G879882_T03 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TACAAGTAGCTGTTGCTGGTATTCCCAAGACTATTGATAATGATATAGCG GTTATAGACAAGTCATTTGGTTTTGATACTGCTGTAGAAGAAGCCCAGCGTEST: gi|19351112|gb|BM895644.1|BM895644
genomic: TACAAGTAGCTGTTGCTGGTATTCCCAAGACTATTGATAATGATATAGCGgtaatttttg ... atatggttagGTTATAGACAAGTCATTTGGTTTTGATACTGCTGTAGAAGAAGCCCAGCGT
EST: TACAAGTAGCTGTTGCTGGTATTCCCAAGACTATTGATAATGATATAGCG GTTATAGACAAGTCATTTGGTTTTGATACTGCTGTAGAAGAAGCCCAGCGTEST: gi|22491553|gb|BU051476.1|BU051476
genomic: TACAAGTAGCTGTTGCTGGTATTCCCAAGACTATTGATAATGATATAGCGgtaatttttg ... atatggttagGTTATAGACAAGTCATTTGGTTTTGATACTGCTGTAGAAGAAGCCCAGCGT
EST: TACAAGTAGCTGTTGCTGGTATTCCCAAGACTATTGATAATGATATAGCG GTTATAGACAAGTCATTTGGTTTTGATCCTGCTGTAGAAGAAGCCCAGCGTEST: gi|33942634|gb|CF349234.1|CF349234
genomic: TACAAGTAGCTGTTGCTGGTATTCCCAAGACTATTGATAATGATATAGCGgtaatttttg ... atatggttagGTTATAGACAAGTCATTTGGTTTTGATACTGCTGTAGAAGAAGCCCAGCGT
EST: TACAAGTAGCTGTTGCTGGTATTCCCAAGACTATTGATAATGATATAGCG GTTATAGACAAGTCATTTGGTTTTGATAGTGCTGTAGAAGAAGCCCAGCGT
genomic: TACAAGTAGCTGTTGCTGGTATTCCCAAGACTATTGATAATGATATAGCGgtaatttttg ... atatggttagGTTATAGACAAGTCATTTGGTTTTGATACTGCTGTAGAAGAAGCCCAGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATCCGGAGACGTGGTCTACAAGTAGCTGTTGCTGGTATTCCCAAGACTATTGATAATGATATAGCGgtaatttttggccacttctacttgttctcttttcagcttgcatagatgcttttgctgcatacctcttgatttggaagactgtagtgcagagacctgtactatgctgattatttgtatatatatggttag
- - - - - - - - - - - - - GCTGTT