1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGATCTTATTGCTCAAAGTATACCTGCTGCAGATCAGCAAGATGCATCTGGAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAGgtacattcctattatcccattttcatcactataaaccatcttgattccacctttggtaaccactgttgcttgaaatgacagtgacatgcactttgtccgc...
species | Zea mays |
transcript | GRMZM5G879882_T03 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAG GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGEST: gi|32858441|gb|CD998122.1|CD998122
genomic: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAGgtacattcct ... tgctctgtagGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG
EST: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAG GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGEST: gi|74238195|gb|DT646109.1|DT646109
genomic: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAGgtacattcct ... tgctctgtagGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG
EST: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAG GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGEST: gi|37401035|gb|CF637880.1|CF637880
genomic: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAGgtacattcct ... tgctctgtagGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG
EST: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAG GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGEST: gi|37382133|gb|CF627993.1|CF627993
genomic: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAGgtacattcct ... tgctctgtagGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG
EST: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAG GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGEST: gi|4967240|gb|AI691913.1|AI691913
genomic: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAGgtacattcct ... tgctctgtagGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG
EST: CACAAGATTAAG GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGEST: gi|40336088|gb|CK370158.1|CK370158
genomic: CACAAGATTAAGgtacattcct ... tgctctgtagGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG
EST: TGGTTGACTCACAAGATTATG GATTATTGCAAGATCAAGAAGATGGAGATGACTATTAAATACATAGEST: gi|76286570|gb|DV026138.1|DV026138
genomic: TGGTTGACTCACAAGATTAAGgtacattcct ... tgctctgtagGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG
EST: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAG GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGEST: gi|113703664|gb|EE681168.1|EE681168
genomic: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAGgtacattcct ... tgctctgtagGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG
EST: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAG GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGEST: gi|120480265|gb|EH210787.1|EH210787
genomic: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAGgtacattcct ... tgctctgtagGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG
EST: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAG GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGEST: gi|108954346|gb|EC365109.1|EC365109
genomic: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAGgtacattcct ... tgctctgtagGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG
EST: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAG GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGEST: gi|33942634|gb|CF349234.1|CF349234
genomic: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAGgtacattcct ... tgctctgtagGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG
EST: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAG GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGEST: gi|86474334|gb|DY240704.1|DY240704
genomic: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAGgtacattcct ... tgctctgtagGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG
EST: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAG GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGEST: gi|6540652|gb|AW225314.1|AW225314
genomic: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAGgtacattcct ... tgctctgtagGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG
EST: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAG GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG
genomic: GAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAGgtacattcct ... tgctctgtagGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCTTATTGCTCAAAGTATACCTGCTGCAGATCAGCAAGATGCATCTGGAAATAAGCTGCTTCTTGATGTTGGTCTCTGGTTGACTCACAAGATTAAGgtacattcctattatcccattttcatcactataaaccatcttgattccacctttggtaaccactgttgcttgaaatgacagtgacatgcactttgtccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT