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GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtcttcttttttacttggtgaacgcagtgttagtttgtaatttatagcatgtcaaggaatctgatgaagtgcctgccatttttttatgtag
species | Zea mays |
transcript | GRMZM5G879882_T03 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|32858441|gb|CD998122.1|CD998122
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|74238195|gb|DT646109.1|DT646109
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|37401035|gb|CF637880.1|CF637880
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|37382133|gb|CF627993.1|CF627993
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|4967240|gb|AI691913.1|AI691913
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|40336088|gb|CK370158.1|CK370158
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGATCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|76286570|gb|DV026138.1|DV026138
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|113703664|gb|EE681168.1|EE681168
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|4966450|gb|AI691306.1|AI691306
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: TAAGGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|120480265|gb|EH210787.1|EH210787
genomic: TAAGGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTTTEST: gi|108954346|gb|EC365109.1|EC365109
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|33942634|gb|CF349234.1|CF349234
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCCACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|86474334|gb|DY240704.1|DY240704
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTEST: gi|6540652|gb|AW225314.1|AW225314
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtcttcttttttacttggtgaacgcagtgttagtttgtaatttatagcatgtcaaggaatctgatgaagtgcctgccatttttttatgtag
- - - GCAAGA
- - - - - AGAGCA
- - - - - - AGCAAG
- - - - - - GCAAGA
- - - - - - - AAGAAG
- - - - - - - - - AAGATG
- - - - - - - - - - GATGGA
- - - - - - - - - - - TGGAGA
- - - - - - - - - - - GGAGAT
- - - - - - - - - - - - GAGATG