1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTAGTTGTTCAGAAGAACAGTCCACGAGGAGTTCACTTCCGTCGTGCTGGACCTCGTCAGAGGgtataacacatttgacacagttatacacctataccattagtgagcaatgcattattttcatgtaggataacataaatattcaaccttcag
species | Zea mays |
transcript | GRMZM5G879882_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGAACAGTCCACGAGGAGTTCACTTCCGTCGTGCTGGACCTCGTCAGAGG GTGTATTTTGAGTCAGAAGAAGTGAAAGCTTGCATTGTAACCTGTGGAGGCEST: gi|8367787|gb|BE050732.1|BE050732
genomic: AGAACAGTCCACGAGGAGTTCACTTCCGTCGTGCTGGACCTCGTCAGAGGgtataacaca ... caaccttcagGTGTATTTTGAGTCAGAAGAAGCGAAAGCTTGCATTGTAACCTGTGGAGGC
EST: AGAACAGTCCACGAGGAGTTCACTTCCGTCGTGCTGGACCTCGTCAGAGG GTGTATTTTGAGTCAGAAGAAGTGAAAGCTTGCATTGTAACCTGTGGAGGCEST: gi|28873675|gb|CB329630.1|CB329630
genomic: AGAACAGTCCACGAGGAGTTCACTTCCGTCGTGCTGGACCTCGTCAGAGGgtataacaca ... caaccttcagGTGTATTTTGAGTCAGAAGAAGCGAAAGCTTGCATTGTAACCTGTGGAGGC
EST: AGAACAGTCCACGAGGAGTTCACTTCCGTCGTGCTGGACCTCGTCAGAGG GGGTATTTTGAGTCAGAAGAAGCGAAAGCTTGCATTGTAACCTGTGGAGGCEST: gi|19436208|gb|BM952618.1|BM952618
genomic: AGAACAGTCCACGAGGAGTTCACTTCCGTCGTGCTGGACCTCGTCAGAGGgtataacaca ... caaccttcagGTGTATTTTGAGTCAGAAGAAGCGAAAGCTTGCATTGTAACCTGTGGAGGC
EST: AGAACAGTCCACGAGGAGTTCACTTCCGTCGTGCTGGACCTCGTCAGAGG GTGTATTTTGAGTCAGAAGAAGTGAAAGCTTGCATTGTAACCTGTGGAGGC
genomic: AGAACAGTCCACGAGGAGTTCACTTCCGTCGTGCTGGACCTCGTCAGAGGgtataacaca ... caaccttcagGTGTATTTTGAGTCAGAAGAAGCGAAAGCTTGCATTGTAACCTGTGGAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGTTGTTCAGAAGAACAGTCCACGAGGAGTTCACTTCCGTCGTGCTGGACCTCGTCAGAGGgtataacacatttgacacagttatacacctataccattagtgagcaatgcattattttcatgtaggataacataaatattcaaccttcag
- - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - GCTGGA