1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tatgtatatgcatagttaaatgtttttatagaaaaataatgcaatgaattgtaatccagaagttttttttaattttgctttatttttaaaatcgccgcagGAAATCCGGAGACGTGGTCTACAAGTAGCTGTTGCTGGTATTCCCAAGACTATTGATAATGATATAGCG
species | Zea mays |
transcript | GRMZM5G879882_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACATTATAGGAGGAGATGGAACTCAGAAGGGTGCATATGAGATTTACAAG GAAATCCGGAGACGTGGTCTACAAGTAGCTGTTGCTGGTATTCCCAAGACTEST: gi|8367787|gb|BE050732.1|BE050732
genomic: TCATTATAGGAGGAGATGGAACTCAGAAGGGTGCATATGAGATTTACAAGgtattctcat ... atcgccgcagGAAATCCGGAGACGTGGTCTACAAGTAGCTGTTGCTGGTATTCCCAAGACT
EST: ACATTATAGGAGGAGATGGAACTCAGAAGGGTGCATATGAGATTTACAAG GAAATCCGGAGACGTGGTCTACAAGTAGCTGTTGCTGGTATTCCCAAGACEST: gi|19351112|gb|BM895644.1|BM895644
genomic: TCATTATAGGAGGAGATGGAACTCAGAAGGGTGCATATGAGATTTACAAGgtattctcat ... atcgccgcagGAAATCCGGAGACGTGGTCTACAAGTAGCTGTTGCTGGTATTCCCAAGAC
EST: ACATTATAGGAGGAGATGGAACTCAGAAGGGTGCATATGAGATTTCCAAG GAAATCCGGAGACGTGGTCTACAAGTAGCTGTTGCTGGTATTCCCAAGACTEST: gi|22491553|gb|BU051476.1|BU051476
genomic: TCATTATAGGAGGAGATGGAACTCAGAAGGGTGCATATGAGATTTACAAGgtattctcat ... atcgccgcagGAAATCCGGAGACGTGGTCTACAAGTAGCTGTTGCTGGTATTCCCAAGACT
EST: TCAGAAGGGTGCATATGAGATTTACAAG GAAATCCGGAGACGTGGTCTACAAGTAGCTGTTGCTGGTATTCCCAAGACTEST: gi|33942634|gb|CF349234.1|CF349234
genomic: TCAGAAGGGTGCATATGAGATTTACAAGgtattctcat ... atcgccgcagGAAATCCGGAGACGTGGTCTACAAGTAGCTGTTGCTGGTATTCCCAAGACT
EST: TCATTATAGGAGGAGATGGAACTCAGAAGGGTGCATATGAGATTTACAGG GAAATCCGGAGACGTGGTCTACAAGTAGCTGTTGCTGGTATTCCCAAGACTEST: gi|19436208|gb|BM952618.1|BM952618
genomic: TCATTATAGGAGGAGATGGAACTCAGAAGGGTGCATATGAGATTTACAAGgtattctcat ... atcgccgcagGAAATCCGGAGACGTGGTCTACAAGTAGCTGTTGCTGGTATTCCCAAGACT
EST: ACATTATAGGAGGAGATGGAACTCAGAAGGGTGCATATGAGATTTACAAG GAAATCCGGAGACGTGGCCTACAAGTAGCTGGTGCTGGCATTCCCAAGACT
genomic: TCATTATAGGAGGAGATGGAACTCAGAAGGGTGCATATGAGATTTACAAGgtattctcat ... atcgccgcagGAAATCCGGAGACGTGGTCTACAAGTAGCTGTTGCTGGTATTCCCAAGACT
gaattgtaatccagaagttttttttaattttgctttatttttaaaatcgccgcagGAAATCCGGAGACGTGGTCTACAAGTAGCTGTTGCTGGTATTCCCAAGACTATTGATAATGATATAGCG
ttttaat putative branch site (score: 133)
agaagttttttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgtatatgcatagttaaatgtttttatagaaaaataatgcaatgaattgtaatccagaagttttttttaattttgctttatttttaaaatcgccgcagGAAATCCGGAGACGTGGTCTACAAGTAGCTGTTGCTGGTATTCCCAAGACTATTGATAATGATATAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT