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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcgtcttcttttttacttggtgaacgcagtgttagtttgtaatttatagcatgtcaaggaatctgatgaagtgcctgccatttttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA

Basic information

species Zea mays
transcript GRMZM5G879882_T03
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os01g53680.1 (Oryza sativa), 3'ss of exon 12
gtaatcgtcttcttttt--------tacttggtgaac----gcagtgttagtttg------taatttata-gcatgtcaaggaatctg---atgaagtg------------cctgccatttttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
||||   |||| |||||        | || | || ||    | |||| |||||||      || ||| ||    | ||   | ||||    ||| | ||            ||||  |||| |    | ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || || |||||||||||||| |||||||| |||||
gtaaagatcttgtttttatgttcaattctcgatgcacatgcggagtgctagtttgaagtactactttttatatgtatctgagtatctccctatggaatgttgcaataacagcctgttatttctaatggcagATCCAACCTACATGATCCGTGCAATTCCAAGCAATGCATCAGACAATGTCTACTGCACACTGCTGGCGCACAGTGCCATTCATGGGGCAATGGCTGGATA

upper sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA13G42990.1 (Glycine max), 3'ss of exon 11
gtaatcgtcttcttttttacttggtgaacgcagtgttagtttgtaatttatagcatgtcaaggaatctgatgaagtgcctgccatttttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
|| |  | | |    | |  ||  | |||    | |   ||| || |  | | ||    |  ||  |  || ||     || |          | |||||| || ||||||||||||||||| ||||| |||||||| || ||||| || |||||||| || || || |||||  | |||||||||||||| |||||
gtga--gacgtgagatctctttttttaac----tatatatttttattgaagaacaaaaaattgacaccaataaaaaaattgtctc--------gcagATCCTACATACATGATCCGTGCTATCCCAAGTAATGCATCTGATAATGTATACTGCACCCTCCTTGCCCAAAGTGCTGTCCATGGTGCAATGGCAGGATA

upper sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA06G09320.1 (Glycine max), 3'ss of exon 10
---------------------------------------------------------------------------gtaatcgtcttctttttta---cttggtgaacgcagtgttagtttgtaattta-tagcatgtcaaggaatctgatgaagtgcctgccatttttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
                                                                           | | | |     |||||||    |||    ||  | | |    || ||||| | |    || | ||     | | ||  |   ||  ||| | |     |||||||||||||||||| || || ||||||||||||||||||||||||||||| || || || || || || |||||  | |||||||||||||| || ||
gtcagtttctcttacagcattctcctcttcctttttgacctatttatttcttacttagtctttcatttttatttcggatttgaaaggttttttaaaatttgactgaca-attatctcattttaattgagttatctgcctagtgggataa-gactttgttgttattgtatctgccagATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGACAATGTCTACTGTACACTTCTTGCTCAGAGTGCAGTCCATGGTGCAATGGCAGGGTA

upper sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA08G21370.1 (Glycine max), 3'ss of exon 10
gtaatcgtcttcttttttacttggtgaacgcagtgttagtttgtaatttatagcatgtcaaggaatctgatgaagtgcctgccatttttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
|| | |    |  ||| |||| |||| |   | ||  |||  || |  | ||  | || ||  | ||| |  || ||      ||||| |    ||||||| || ||||||||||| ||| ||||||| | |||||| || ||||| |||||||| || || || || |||||  |||||||||||||||| |||||
gtgagctctattctttctact-ggtgca---aatgagagt--gttacctgtataaagt-aaatattctaaccaattgaaaaaaattttgtgtgatagATCCCACCTACATGATCCGAGCTGTTCCAAGTATTGCATCTGATAATGTATATTGCACTCTCCTTGCTCAAAGTGCTGTTCATGGTGCAATGGCTGGATA

upper sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA07G15170.1 (Glycine max), 3'ss of exon 11
gtaatcgtcttcttttttacttggtgaacgcagtgttagtttgta-atttatagcatgtcaaggaat--ctgatgaagtgcctgccatttttttatgt-----agATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
    |         ||  ||||  || |   | | | ||| || | |   | |        || |||  ||||   |||   |||| | | |||||||     |||||||||||| ||||| || ||||||||||||||||| || ||||| || || ||||| || || || || |||||  ||||||| |||||||| || ||
---gtttgtaaagattaaacttcatgga---attataagtgtgcacacacacactgaaaagagcaatggctgaaagagtaa-tgccttctctttatgttttacagATCCAACTTATATGATTCGAGCTATTCCAAGCAATGCTTCTGACAACGTGTACTGCACACTTCTTGCTCAAAGTGCAGTTCATGGAGCAATGGCAGGTTA

upper sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA04G09180.1 (Glycine max), 3'ss of exon 11
--------------------------------------------gtaatcgtcttcttttttacttggtgaacgcagtgttagtttgtaattta---------tagcat--gtcaaggaatct--------gatgaagtgcctgccatttttttatgt---agATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
                                             |  | |||||   ||||  ||   ||   ||  | |  |||  |||||          ||   |    ||||  ||||        |   |||    ||   || || ||| |   ||||||||||||||||||||| || || | ||||||||||||||| |||||||| || || || || || || |||||  | |||||||||||||| || ||
gtcagtttctcttacagcattctcttcctttttgacctatttatttcttggtctttcatttttatttcggatttcaaaggttttttaaaatttgacaattatctaattttaaccaagttatctacatcgtgggataaggctttgttgttgttgtatctgccagATCCAACTTACATGATCCGGGCAATCCAAAGCAATGCATCAGATAATGTCTACTGTACACTTCTTGCTCAGAGTGCAGTCCATGGTGCAATGGCAGGGTA

upper sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA15G02400.1 (Glycine max), 3'ss of exon 11
gtaatcgtcttcttttttacttggtgaacgcagtgttagtttgtaatttatagcatgtcaaggaatctgatgaagtgcctgccatttttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
|| |  |   |||||||||       |||    |||   ||| || |  | | ||    |  ||  | ||| ||         |  || |   | |||||| |||||||||||||||||||| ||||| |||||||| || ||||| || |||||||| || || || |||||  |||||||||||||||| |||||
gtga--gctctctttttta-------aac----tgtatatttttattaaagaacaaaaaattgataccgataaaaa-------aaattgtctcgcagATCCTACTTACATGATCCGTGCTATCCCAAGTAATGCATCTGATAATGTATACTGCACCCTCCTTGCCCAAAGTGCTGTTCATGGTGCAATGGCAGGATA

upper sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA07G01710.1 (Glycine max), 3'ss of exon 10
gtaatcgtcttcttttttacttggtgaacgcagtgttagtttgtaatttatagcatgtcaaggaatctgatgaagtgcctgccatttttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
|| | |    |  ||| |||| |||| |   | || |||| ||| |  ||||  | || ||    ||| |  || ||       || | |   |||||||| || ||||||||||||||| ||||||| | |||||| || |||||  ||||||| || || || || |||||  |||||||||||||||| |||||
gtgagctctcttctttctact-ggtgca---aatggtagtgtgttacctatataaagt-aaatgttctaaccaattgaaattttttctgtccggtagATCCCACCTACATGATCCGTGCTGTTCCAAGTATTGCATCTGATAATGTACATTGCACTCTCCTTGCTCAAAGTGCTGTTCATGGTGCAATGGCTGGATA

upper sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA01G00870.1 (Glycine max), 3'ss of exon 11
gtaatcgtcttcttttttacttggtgaacgcagtgttagtttgtaatttatagcatgtcaaggaatctgatgaagtgcctgccatttttt--tatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
    | ||     ||   | ||  || |     |||  ||    |   |  |    |  | ||        | | ||||| |  |||| |  | |  ||||||||| || |||||||| ||||||||||||||||| || ||||| || || ||||| || || || || |||||  ||||||| |||||||| || ||
--gtttgtaaagattaaaagttcatgga-attatgtgtgtacacacactgaaaggagcaatggctgaaagagtaatgccttctcttttctgttttacagATCCAACCTATATGATCCGAGCTATTCCAAGCAATGCCTCTGACAACGTGTACTGCACACTTCTTGCTCAAAGTGCAGTTCATGGAGCAATGGCAGGTTA

upper sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
lower sequence: AT4G29220.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaatcgtcttcttttttacttggtgaacgcagtgttagtttgtaatttatagcatgtcaagga-atctgatgaagtgcctgccattttttta------tgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
                    |   |  |     | | ||||| |  ||| | | ||||  |  | |   ||| ||||  || |   ||||||       |  ||||||||| |||||||| || ||| |||| |||||||||||||||||||| |  ||||| ||  | || || || ||  ||||||| |  ||||| || ||
-------------------gtatatagatatcttatgagtttttcttttgt-gtatgtggaacataatagataaagtttcttcttcttttttggtgtctttcagATCCAACCTACATGATACGAGCTGTTCCGAGCAATGCATCAGACAATGTATGCTGCACGCTTTTAGCTCAAAGCGCGGTTCATGGAGTGATGGCTGGTTA

upper sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
lower sequence: AT4G26270.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaatcgtcttcttttttacttggtgaacgcagtgttagtttgtaatttatagcatgtcaaggaatctgatgaagtgcctgccatttttttatgt-agATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
               |  | ||  |   |   |  ||   ||    | |  | ||||   ||     ||||        |  | | | || || | ||||||||| |||||||| || ||| |||| |||||||| ||||||||||| ||||| || || || || || |||||  | || ||||||||||| |||||
--------------gtacaatttatatcccttgcattgcatt---ctctccaccatg---agtttcttgattgttcatttttcttgtcttaatttcagATCCAACATACATGATTCGAGCTGTTCCTAGCAATGCGTCAGACAATGTTTATTGTACACTTCTGGCTCAGAGTGCAGTGCACGGTGCAATGGCTGGATA

upper sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
lower sequence: AT5G56630.1 (Arabidopsis thaliana), 3'ss of exon 8
---------------------------gtaatcgtcttcttttttacttgg----tgaacgcagtgttagtttgtaatt--tatag---catgtcaaggaatctgatgaagtgcctgccatttttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
                           |  ||  |  |   ||||||        |   |  || |||  |||    ||  | |||   ||| | ||| |   | |    |||  ||    |    ||  | ||||| || ||||||||||| ||| ||||||| ||||||||||||||||| || |                                              
gtaagagttaaaaactttcaagatcatgagattcttatgccttttacagaaaatttcctcatagggtttatttcctcttgttgtagGATCATTTTAAGAAGAATAAGATGGTGA-TGAATCTCAAATACATTGATCCTACATACATGATCCGGGCTGTTCCAAGTAATGCATCAGACAATGTTTACT----------------------------------------------

upper sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
lower sequence: AT4G32840.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaatcgtcttcttttttacttggtgaacgcagtgttagtttgtaatttatagcatgtcaaggaatctgatgaagtgcctgccatttttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
               |    |||     | ||   | |  | |   |  ||||    |  | ||||  ||  |  || ||  ||     |  |  |||||| || ||||||||||| |||||||||  ||||||||| ||||| ||||| |  || || || || || || ||  | |||||||||||||| || ||
--------------gtacgtttgtcctccccaaattcaagtcgagctacatag---attcatgaattaga-aatatgact--caaaccatgtttcagATCCGACATACATGATCCGAGCTATTCCAGCCAATGCATCTGACAACGTCTACTCAACTCTCCTTGCCCAAAGCGCAGTCCATGGTGCAATGGCTGGCTA

upper sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
lower sequence: Vv04s0008g00520.t01 (Vitis vinifera), 3'ss of exon 11
gtaatcgtcttcttttttac-ttggtgaacgcagtgttagtttgtaatttatagca-tgtcaaggaatctgatgaagtgcctgccatttttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
|| |  | ||||   |||   || ||  |   | | ||  |||   ||||     | |  |||   ||    | |  |  |  |    || |  || |||||| || ||||||||||||||||||||| |||||||||| |||||||| || ||||| || || || || |||||  ||||||| |||||||| || ||
gtcagtgacttcagatttgtgtttgtttatttatttttccttttagatttggcttagtaacaatagattc--taagctatc--ctgagttgtcttgcagATCCTACATACATGATCCGTGCTATTCCAGGCAATGCATCTGACAATGTGTACTGCACACTCCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGTTA

upper sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 11
gtaatcgtcttcttttttacttggtgaacgcagtgttagtttgtaatttatagcatgtcaagga---atctgatgaagtgcctgccatttttttatgt-agATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
                    || ||  || |  | ||   |  ||  |   |||  | ||| |     ||| |  |||||| |||  ||||| | | | |||||| || || |||||||||||| |||||||||||||||| ||||||||||||||||| || || || || |||||  ||||||| |||||||| || ||
-------------------gtttgtatacactatcttt-ctaatatatagaagctgggcaatggctggtctaaccaagtgc-tgcactttttgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCTATTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTA

upper sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
lower sequence: PP1S81_165V6.1 (Physcomitrella patens), 3'ss of exon 13
-------------------------gtaatcgtcttcttttttacttggtgaacgcagtgtta-gtttgtaa-----tttatagcatgtcaaggaatctgatg-aagtgcctgccatttttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
                          |     | ||||||  | ||||||   ||   |  ||  ||  | |      || |||    |    |  |   ||   ||| |   |||  |  || || ||||||||| |||||||| || ||| ||||||||||||| || ||||| || || |||||  |||| || ||||| ||||| ||||| || ||||| || ||
gtggccatatgcccagttgaaaacttttggttttttctttgctgcttggttctcgtgcttctatattcatgaaattccttttagtcgtttttaggcttgaatatgagtactcaccacatgattctgcagATCCAACGTACATGATTCGAGCTGTTCCAAGCAATGCTTCTGACAACGTGTACTGCACTTTGCTTGCTCATAGCGCCATCCATGGAGCTATGGCAGGGTA

upper sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
lower sequence: PP1S282_45V6.1 (Physcomitrella patens), 3'ss of exon 12
----------------------------------------------------------gtaatcgtcttcttttt-tact-tggtgaacgcagtgttagtttgtaatttatagcatgtcaaggaatctgatgaag-tgcctgccatttttt---tatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
                                                            |   |||   |||||  ||| ||| |||     |      | |  |  |  |   ||     | ||  ||| |   |||     ||    |   | || |||||| || || ||||| || || |||||||||||||| || ||||||||||| |||||  |||| || ||||| ||||| ||||| || ||||| || ||
gtacagtagccgtcaactgttctaactgttgagtgatggtgatccgtcttcctggtctacatctgtcgattttttacactgtggggaattgcttacattctggccacgtccatggtgatcttgcattcgataagactgctcattatgccatagttctgcagATCCGACGTATATGATTCGAGCAATTCCAAGCAATGCTTCGGACAATGTCTACTGCACATTGCTGGCTCATAGCGCCATCCATGGGGCTATGGCAGGGTA

upper sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
lower sequence: PP1S131_40V6.1 (Physcomitrella patens), 3'ss of exon 12
-----------------------------------------------------------------------------------gtaatcgtcttcttttttacttggtgaacgcagtgttagtttgtaatttatagcatgtcaaggaatctgatgaagtgcctg-ccattttt-ttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
                                                                                   || |   | ||    |  ||| |  |||  |  ||    |     | ||  |     || ||  || |||  |||        || | |  || | ||||||| |  |||||||| || || || || |||||||| || |||||||||||||||||| ||||||| ||| |||| |||||||| || ||||| || ||
gtatgataaaatgaccaaaaccttcattggtctctctctctttctctctctttctctctctacctcacagatatcgacgtcaagtgaaaattttggactaaactagcagaagaccttgcgcttgacccagtttcaaagcatcgag--atttgactaagaataaaatcactgtggttttttagATCCTAAGTACATGATTCGAGCGATACCGAGCAATGCTTCTGACAATGTCTATTGCACCTTGCTCGCTCATGGTGCGATTCATGGAGCCATGGCTGGTTA

upper sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
lower sequence: PP1S69_13V6.1 (Physcomitrella patens), 3'ss of exon 12
gtaatcgtcttcttttttacttggtgaacgcagtgttagtttgtaatttatagcatgtcaaggaatc---tgatgaagtgcctgccat---ttttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
|||  |     | |  ||  ||  ||   ||  || |  || ||    | ||| | |   |   | |     |   | |  | |   |   |   ||  | |||||||||||||||||| || ||| | || || | |||||| || ||||| || |||||| || | || ||||||||||| |||||||| ||||| || | 
gtatacaagaccctactt--ttaatgtgggctatggttatt-gtgggctgtagtacgctgaaagagcgctcaacacactaacagttgtggatccgtttggcagATCCAACTTACATGATTCGAGCTGTACCGAGTATTGCATCTGATAATGTTTACTGCACCTTGTTGGCGCATAGTGCCATCCATGGTGCTATGGCTGGTTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40334982|gb|CK369052.1|CK369052
EST:     GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG                         ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|32858441|gb|CD998122.1|CD998122
EST:     GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG                         ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|74238195|gb|DT646109.1|DT646109
EST:     GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG                         ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|37401035|gb|CF637880.1|CF637880
EST:     GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG                         ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|37382133|gb|CF627993.1|CF627993
EST:     GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG                         ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|4967240|gb|AI691913.1|AI691913
EST:     GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG                         ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|40336088|gb|CK370158.1|CK370158
EST:     GATTATTGCAAGATCAAGAAGATGGAGATGACTATTAAATACATAG                         ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|76286570|gb|DV026138.1|DV026138
EST:     GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG                         ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|113703664|gb|EE681168.1|EE681168
EST:     GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG                         ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|4966450|gb|AI691306.1|AI691306
EST:     TAAGGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG                         ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
genomic: TAAGGATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|120480265|gb|EH210787.1|EH210787
EST:     GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG                         ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTTT
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|108954346|gb|EC365109.1|EC365109
EST:     GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG                         ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|33942634|gb|CF349234.1|CF349234
EST:     GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG                         ATCCCACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|86474334|gb|DY240704.1|DY240704
EST:     GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG                         ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|6540652|gb|AW225314.1|AW225314
EST:     GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAG                         ATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATTATTGCAAGAGCAAGAAGATGGAGATGACTATTAAATACATAGgtaatcgtct ... ttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatttatagcatgtcaaggaatctgatgaagtgcctgccatttttttatgtagATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA
                      atctgat  putative branch site (score: 4)
                                   cctgccattttttt  putative PPT
                                         atttttttatgta  TA-rich tract