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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATACAGCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaactttcgctgcatacctttcatacagggataatattagtatgctccttggtgccatctttttcattctctgaacatgcaagagagtttata...

Basic information

species Zea mays
transcript GRMZM5G879882_T03
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G879882_T03 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os01g53680.1 (Oryza sativa), 5'ss of exon 13
TTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATACAGCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaactttc---gctgcatacctttcatacagggataatatt--agtatgctccttggtgccatctttttcattc---tctgaacatgcaagagagtttata----------------------------
 ||||| ||||| || || |||||||||||||| |||||||| ||||| ||||| ||||| |||||||| ||||||||||||||||| || |||||||| |||||||||| |||      | | |   |||  | | |     | |||  |  ||  | |      | ||  |  | | |    | | | | |  || ||     ||                             
CTGCACACTGCTGGCGCACAGTGCCATTCATGGGGCAATGGCTGGATATAGCTTCACAGTTGGAATGGTCAATGGCAGGCATGCATACATTCCATTTCACgtgagtacaaatttttgtattaccttaattttctccggttcccagattcaaacatattaccctcaacaattatcatgaattaaatattaccctttaacagttcgcatgacatcaatttttgtgttctgacaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32858441|gb|CD998122.1|CD998122
EST:     GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
genomic: GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
EST: gi|91876347|gb|EB406304.1|EB406304
EST:     GCTTTCCAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATCTCCAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGGG
genomic: GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
EST: gi|74238195|gb|DT646109.1|DT646109
EST:     GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
genomic: GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
EST: gi|37401035|gb|CF637880.1|CF637880
EST:     GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
genomic: GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
EST: gi|37382133|gb|CF627993.1|CF627993
EST:     GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
genomic: GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
EST: gi|4967240|gb|AI691913.1|AI691913
EST:     GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATCTACAAGGA
genomic: GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGA
EST: gi|40336088|gb|CK370158.1|CK370158
EST:     GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
genomic: GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
EST: gi|16926962|gb|BM080030.1|BM080030
EST:     GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
genomic: GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
EST: gi|76286570|gb|DV026138.1|DV026138
EST:     GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATCTCCAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
genomic: GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
EST: gi|113703664|gb|EE681168.1|EE681168
EST:     GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
genomic: GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
EST: gi|4966450|gb|AI691306.1|AI691306
EST:     GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
genomic: GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
EST: gi|4609847|gb|AI600686.1|AI600686
EST:     GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
genomic: GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
EST: gi|91876348|gb|EB406305.1|EB406305
EST:     GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
genomic: GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
EST: gi|5688732|gb|AI941747.1|AI941747
EST:     GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
genomic: GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
EST: gi|120480265|gb|EH210787.1|EH210787
EST:     GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATTTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGGG
genomic: GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
EST: gi|108954346|gb|EC365109.1|EC365109
EST:     GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
genomic: GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
EST: gi|211050013|gb|FL347978.1|FL347978
EST:     GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
genomic: GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
EST: gi|120480087|gb|EH210728.1|EH210728
EST:     GGCATGCATATATACCATTTCAT                         AGGGTAACATTTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
genomic: GGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
EST: gi|148999634|gb|EE036619.2|EE036619
EST:     CCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
genomic: -CTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
EST: gi|86474334|gb|DY240704.1|DY240704
EST:     GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
genomic: GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
EST: gi|6540652|gb|AW225314.1|AW225314
EST:     GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCAT                         AGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG
genomic: GCTTTACAGTCGGAATGGTTAATGGCAGGCATGCATATATACCATTTCATgtgagtacaa ... gtgacaacagAGGGTAACATCTACAAGGAACAAGGTGAGGATAACTGACAGGATGTGGGCG