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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATCAGAGCCCGCTTGCAGgttttacttttgaaactttctaagttttcatgtccatacttattttttaattttaatctcttctgagttttgattatttataactcttatgtgtggttttccag

Basic information

species Zea mays
transcript GRMZM5G840435_T02
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71313593|gb|DR793372.1|DR793372
EST:     CCAGGTCATCAGAGCCCGCTTGCAG                         CAACGGCCTGGCACTGATGGTACTCCAAAGTACTCAAATAGCTGGCATGTA
genomic: CCAGGTCATCAGAGCCCGCTTGCAGgttttacttt ... ggttttccagCAACGGCCTGGCACTGATGGTACTCCAAAGTACTCAAATAGCTGGCATGTA
EST: gi|211238866|gb|FL413554.1|FL413554
EST:     CCAGGTCATCAGAGCCCGCTTGCAG                         CAACGGCCTGGCACTGATGGTACTCCAAAGTACTCAAATAGCTGGCATGTA
genomic: CCAGGTCATCAGAGCCCGCTTGCAGgttttacttt ... ggttttccagCAACGGCCTGGCACTGATGGTACTCCAAAGTACTCAAATAGCTGGCATGTA
EST: gi|211152599|gb|FL451785.1|FL451785
EST:     CCAGGTCATCAGAGCCCGCTTGCAG                         CAACGGCCTGGCACTGATGGTACTCCAAAGTACTCAAATAGCTGGCATGTA
genomic: CCAGGTCATCAGAGCCCGCTTGCAGgttttacttt ... ggttttccagCAACGGCCTGGCACTGATGGTACTCCAAAGTACTCAAATAGCTGGCATGTA