1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTGAATTCCATCGATTTTGCGGCACTTGGGGCTGGTTCAAAAGTAGCTGCTATTCTACTTACTTATCCTTACCAGgcaatttcctctgctcctacttatattctcataaactccataagtatattctacctttttattgaacatatgtttttttaatctgtag
species | Zea mays |
transcript | GRMZM5G840435_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTGGGGCTGGTTCAAAAGTAGCTGCTATTCTACTTACTTATCCTTACCAG GTCATCAGAGCCCGCTTGCAGEST: gi|211238866|gb|FL413554.1|FL413554
genomic: TTGGGGCTGGTTCAAAAGTAGCTGCTATTCTACTTACTTATCCTTACCAGgcaatttcct ... taatctgtagGTCATCAGAGCCCGCTTGCAG
EST: GTTCAAAAGTAGCTGCTATTCTACTTACTTCTTCTTACCAG GTCATCAGAGCCCGCTTGCAGEST: gi|71313594|gb|DR793373.1|DR793373
genomic: GTTCAAAAGTAGCTGCTATTCTACTTACTTATCCTTACCAGgcaatttcct ... taatctgtagGTCATCAGAGCCCGCTTGCAG
EST: TTGGGGCTGGTTCAAAAGTAGCTGCTATTCTACTTACTTATCCTTACCAG GTCATCAGAGCCTGCTTGCAEST: gi|211152599|gb|FL451785.1|FL451785
genomic: TTGGGGCTGGTTCAAAAGTAGCTGCTATTCTACTTACTTATCCTTACCAGgcaatttcct ... taatctgtagGTCATCAGAGCCCGCTTGCA
EST: TTGGGGCTGGTTCAAAAGTAGCTGCTATTCTACTTACTTATCCTTACCAG GTCATCAGAGCCCGCTTGCAG
genomic: TTGGGGCTGGTTCAAAAGTAGCTGCTATTCTACTTACTTATCCTTACCAGgcaatttcct ... taatctgtagGTCATCAGAGCCCGCTTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAATTCCATCGATTTTGCGGCACTTGGGGCTGGTTCAAAAGTAGCTGCTATTCTACTTACTTATCCTTACCAGgcaatttcctctgctcctacttatattctcataaactccataagtatattctacctttttattgaacatatgtttttttaatctgtag
- - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - GCTGCT