1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tttctgtgaattatttctgctcttacttgttcatgttttgttttgtctatatttgattttatacatcggtaactttgcttacttgttcgtgtaaagccagATGCTTTGAAAACTATTCTAAGAGAGGAGGGATTTCTTGCACTTTATAGGGGAATTGGACCTGGTCTTTTGCTG
species | Zea mays |
transcript | GRMZM5G840435_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAACTACAAACAGCTAAACACCATACTTCTCAGTATTCTGGTTTTTCTG ATGCTTTGAAAACTATTCTAAGAGAGGAGGGATTTCTTGCACTTTATAGGGEST: gi|76013124|gb|DT940294.1|DT940294
genomic: GCAACTACAAACAGCTAAACACCATACTTCTCAGTATTCTGGTTTTTCTGgtaatatgtg ... gtaaagccagATGCTTTGAAAACTATTCTAAGAGAGGAGGGATTTCTTGCACTTTATAGGG
EST: GCAACTACAAACAGCTAAACACCATACTTCTCAGTATTCTGGTTTTTCTG CEST: gi|76013124|gb|DT940294.1|DT940294
genomic: GCAACTACAAACAGCTAAACACCATACTTCTCAGTATTCTGGTTTTTCTGgtaatatgtg ... gtaaagccag-
EST: GCAACTACAAACAGCTAAACACCATACTTCTCAGTATTCTGGTTTTTCTG CEST: gi|76013124|gb|DT940294.1|DT940294
genomic: GCAACTACAAACAGCTAAACACCATACTTCTCAGTATTCTGGTTTTTCTGgtaatatgtg ... gtaaagccag-
EST: GCAACTACAAACAGCTAAACACCATACTTCTCAGTATTCTGGTTTTTCTG CEST: gi|71313594|gb|DR793373.1|DR793373
genomic: GCAACTACAAACAGCTAAACACCATACTTCTCAGTATTCTGGTTTTTCTGgtaatatgtg ... gtaaagccag-
EST: GCAACTACAAACAGCTAAACACCATACTTCTCAGTATTCTGGTTTTTCTG ATGCTTTGAAAACTATTCTAAGAGAGGAGGGATTTCTTGCACTTTATAGGG
genomic: GCAACTACAAACAGCTAAACACCATACTTCTCAGTATTCTGGTTTTTCTGgtaatatgtg ... gtaaagccagATGCTTTGAAAACTATTCTAAGAGAGGAGGGATTTCTTGCACTTTATAGGG
tctatatttgattttatacatcggtaactttgcttacttgttcgtgtaaagccagATGCTTTGAAAACTATTCTAAGAGAGGAGGGATTTCTTGCACTTTATAGGGGAATTGGACCTGGTCTTTTGCTG
tgcttac putative branch site (score: 18)
atttgattttatacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctgtgaattatttctgctcttacttgttcatgttttgttttgtctatatttgattttatacatcggtaactttgcttacttgttcgtgtaaagccagATGCTTTGAAAACTATTCTAAGAGAGGAGGGATTTCTTGCACTTTATAGGGGAATTGGACCTGGTCTTTTGCTG
-ttctgtg
- - - - - - - ttctgct
- - - - - - - - - - - - - - gttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttac