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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCATGGACGTGGGAGAACGCAGCGGCTGGAGCTGCCGCCGGGTTCGCCACGGTCGCGGCCCTCCACCCGCTCGACGTCGTCCGCACCCGCTTCCAAGgtaatcctcgcctcaggctacatactctaggatttcagagactaagaacgacgaacggtaactgctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgtgttggcgtgcag

Basic information

species Zea mays
transcript GRMZM5G840435_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G840435_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g52430.1 (Oryza sativa), 5'ss of exon 1
GAGGCATGGACGTGGGAGAACGCAGCGGCTGGAGCTGCCGCCGGGTTCGCCACGGTCGCGGCCCTCCACCCGCTCGACGTCGTCCGCACCCGCTTCCAAGgtaatcctcgcctcaggctacatactctaggatttcagagactaagaacgacgaacggtaactgctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgtgttggcgtgcag
||||| ||||||||||||||||| || || ||||| |||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||| ||   || |   | ||   |  | | |    ||     | ||    ||   ||   ||| ||  |  | ||   |||   | |   | |                                                         
GAGGCCTGGACGTGGGAGAACGCCGCCGCAGGAGCGGCCGCCGGCTTCGCCACCGTCGCGACCCTCCACCCGCTCGACGTCGTCCGCACCCGTTTCCAAGgtaaacccaacccc---ccacgggcgttcgaaccctagg----aggagacgcgggaggc--ctggtcggtaaccctgcgtctgcgtgtggatgtgcag-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28909797|gb|CB331105.1|CB331105
EST:     CACGGTCGCGGCCCTCCACCCGCTCGACGTCGTCCGCACCCGCTTCCAAG                         TGAGCGGCGGAAGGGGGTGGTCTGAAGTGCCTCCGTACAGGAACACCGCGC
genomic: CACGGTCGCGGCCCTCCACCCGCTCGACGTCGTCCGCACCCGCTTCCAAGgtaatcctcg ... tggcgtgcagTGAGCGGCGGAAGGGGGTGGTCTGAAGTGCCTCCGTACAGGAACACCGCGC
EST: gi|76013124|gb|DT940294.1|DT940294
EST:     CACGGTCGCGGCCCTCCACCCGCTCGACGTCGTCCGCACCCGCTTCCAAG                         TGAGCGGCGGAAGGGGGTGGTCTGAAGTGCCTCCGTACAGGAACACCGCGC
genomic: CACGGTCGCGGCCCTCCACCCGCTCGACGTCGTCCGCACCCGCTTCCAAGgtaatcctcg ... tggcgtgcagTGAGCGGCGGAAGGGGGTGGTCTGAAGTGCCTCCGTACAGGAACACCGCGC
EST: gi|71313594|gb|DR793373.1|DR793373
EST:     CACGGTCGCGGCCCTCCACCCGCTCGACGTCGTCCGCACCCGCTTCCAAG                         TGAGCGGCGGAAGGGGGTGGTCTGAAGTGCCTCCGTACAGGAACACCGCGC
genomic: CACGGTCGCGGCCCTCCACCCGCTCGACGTCGTCCGCACCCGCTTCCAAGgtaatcctcg ... tggcgtgcagTGAGCGGCGGAAGGGGGTGGTCTGAAGTGCCTCCGTACAGGAACACCGCGC
EST: gi|31406342|gb|CD485074.1|CD485074
EST:     CACGGTCGCGGCCCTCCACCCGCTCGACGTCGTCCGCACCCGCTTCCAAG                         TGAGCGGCGGAAGGGGGTGGTCTGAAGTGCCTCCGTACAGGAACACCGCGC
genomic: CACGGTCGCGGCCCTCCACCCGCTCGACGTCGTCCGCACCCGCTTCCAAGgtaatcctcg ... tggcgtgcagTGAGCGGCGGAAGGGGGTGGTCTGAAGTGCCTCCGTACAGGAACACCGCGC