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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTGAGAGGACTTTATGCAGGATTTTATCCCGCAGTTCTTGGATCAACTGTTTCCTGGGGCCTATATTTCTTTTTgtaagttactatattatttctttgtctttgaataatagtgctgtgttctttttttttgatctactaaagtagactcaagtaaataactactttcaggatt...

Basic information

species Zea mays
transcript GRMZM5G840435_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G840435_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g52430.1 (Oryza sativa), 5'ss of exon 3
GGCCTGAGAGGACTTTATGCAGGATTTTATCCCGCAGTTCTTGGATCAACTGTTTCCTGGGGCCTATATTTCTTTTTgtaagttactatattatttctttgtctttgaataat---agtgctgtgttctttttttttgatctactaaagtagactcaagtaaataactactttcaggatt
|| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||   ||| | ||| || | ||||||||||   ||||  ||    |  |  | ||      |     |  || |||| |||  |   ||||||||||
GGTCTGAGAGGACTTTATGCGGGATTTTATCCAGCAGTTCTTGGATCAACTGTTTCCTGGGGGCTATATTTCTTTTTgtaagtta---tataaattcgttttatttgaataattatagtgtagtaagataatgatctgtctgtatcttaaatgctgaagttaattgcatatttcaggatt

upper sequence: GRMZM5G840435_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT5G66380.1 (Arabidopsis thaliana), 5'ss of exon 3
GGCCTGAGAGGACTTTATGCAGGATTTTATCCCGCAGTTCTTGGATCAACTGTTTCCTGGGGCCTATATTTCTTTTTgtaagt------------tactatattatttctttgtctttgaat--------aatagtgctgtgttctttttttttgatctactaaa-gtagactcaagtaaataactactttcaggatt-----------------
||  ||||||| ||||||||||| || |  || |||||| | || || ||||||||||||||| |||| |||||||||| |||            ||  | ||   |||||| |   ||| |        || |||  | ||||  |||||||     |  ||   || ||      | || |  | ||   |  | |                 
GGTTTGAGAGGGCTTTATGCAGGCTTCTTCCCTGCAGTTATCGGTTCTACTGTTTCCTGGGGCTTATACTTCTTTTTgtgagtgttactttcgtttagcacatatcttctttcttcatgatttctattcaaacagttttctgttagtttttttaatgtttttagccgtggatcttgtttaaaatgttctggaacaaatatattatctctctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28909797|gb|CB331105.1|CB331105
EST:     TATCCCGCAGTTCTTGGATCAACTGTTTCCTGGGGCCTATATTTCTTTTT                         CTATAACAGAGCTAAACAAAGGTACTTACAGAGGAAGAATGACCAGCTTCA
genomic: TATCCCGCAGTTCTTGGATCAACTGTTTCCTGGGGCCTATATTTCTTTTTgtaagttact ... ttttttaaagCTATAACAGAGCTAAACAAAGGTACTTACAGAGGAAGAATGACCAGCTTCA
EST: gi|76013124|gb|DT940294.1|DT940294
EST:     TATCCCGCAGTTCTTGGATCAACTGTTTCCTGGGGCCTATATTTCTTTTT                         CTATAACAGAGCTAAACAAAGGTACTTACAGAGGAAGAATGACCAGCTTCA
genomic: TATCCCGCAGTTCTTGGATCAACTGTTTCCTGGGGCCTATATTTCTTTTTgtaagttact ... ttttttaaagCTATAACAGAGCTAAACAAAGGTACTTACAGAGGAAGAATGACCAGCTTCA
EST: gi|71313594|gb|DR793373.1|DR793373
EST:     TATCCCGCAGTTCTTGGATCAACTGTTTCCTGGGGCCTATATTTCTTTTT                         CTATAACAGAGCTAAACAAAGGTACTTACAGAGGAAGAATGACCAGCTTCA
genomic: TATCCCGCAGTTCTTGGATCAACTGTTTCCTGGGGCCTATATTTCTTTTTgtaagttact ... ttttttaaagCTATAACAGAGCTAAACAAAGGTACTTACAGAGGAAGAATGACCAGCTTCA
EST: gi|31406342|gb|CD485074.1|CD485074
EST:     TATCCCGCAGTTCTTGGATCAACTGTTTCCTGGGGCCTATATTTCTTTTT                         CTATAACAGAGCTAAACAAAGGTACTTACAGAGGAAGAATGACCAGCTTCA
genomic: TATCCCGCAGTTCTTGGATCAACTGTTTCCTGGGGCCTATATTTCTTTTTgtaagttact ... ttttttaaagCTATAACAGAGCTAAACAAAGGTACTTACAGAGGAAGAATGACCAGCTTCA