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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTTTGAAAACTATTCTAAGAGAGGAGGGATTTCTTGCACTTTATAGGGGAATTGGACCTGGTCTTTTGCTGgtatgtatttatatttacctgctgctagctgagttttattctccatttctttgtcaaactacaactatactcatataactgctagttacaatagtggagt...

Basic information

species Zea mays
transcript GRMZM5G840435_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G840435_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g52430.1 (Oryza sativa), 5'ss of exon 6
ATGCTTTGAAAACTATTCTAAGAGAGGAGGGATTTCTTGCACTTTATAGGGGAATTGGACCTGGTCTTTTGCTGgtatgtatttatatttacctgctgctagctgagttttattctccatttctttgt-caaact-acaactatactcatataactgctagttacaatagtggagt--
||||||||| ||||||||| | |||||||||||  ||||| ||||| || || ||||||||||| ||||||||||||||| |||   ||| |||| || |   | |  ||||   |  | | ||     || ||| |  | ||||  || | ||    ||||   |||  |  |    
ATGCTTTGAGAACTATTCTGAAAGAGGAGGGATGGCTTGCGCTTTACAGAGGGATTGGACCTGGGCTTTTGCTGgtatgtgttt---ttttcctgttgtttattcatctttacgttatagtcctacaaacatactcatgattataaccacacaaggcttagt-gtaattttaaatatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71313593|gb|DR793372.1|DR793372
EST:     AGGAGGGATTTCTTGCACTTTATAGGGGAATTGGACCTGGTCTTTTGCTG                         GTCACCCATGGCGCAATACAGTTCACGGCCTATGAGGAACTTCGCAAAGCT
genomic: AGGAGGGATTTCTTGCACTTTATAGGGGAATTGGACCTGGTCTTTTGCTGgtatgtattt ... tgcatgaaagGTCACCCATGGCGCAATACAGTTCACGGCCTATGAGGAACTTCGCAAAGCT
EST: gi|71313594|gb|DR793373.1|DR793373
EST:     AGGAGGGATTTCTTGCACTTTATAGGGGAATTGGACCTGGTCTTTTGCTG                         GTCACCCATGGCGCAATACAGTTCACGGCCTATGAGGAACTTCGCAAAGCT
genomic: AGGAGGGATTTCTTGCACTTTATAGGGGAATTGGACCTGGTCTTTTGCTGgtatgtattt ... tgcatgaaagGTCACCCATGGCGCAATACAGTTCACGGCCTATGAGGAACTTCGCAAAGCT