Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATATTTGGAGGATTGGATTTCAAAAGAAAGAGCTACAGGGAGTTGTCTTTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctctttgttctagttcatgtgaattatgaagtgctgattgtccatgctctagaaaaatacaacatagattttacttatagaaaagcagtgctaaaa...

Basic information

species Zea mays
transcript GRMZM2G574782_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G574782_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os11g29370.1 (Oryza sativa), 5'ss of exon 9
TCATATTTGGAGGATTGGATTTCAAAAGAAAGAGCTACAGGGAGTTGTCTTTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctctttgttctagttcatgtg-aattatgaagtgctgattgtccatgctctagaaaaatacaacatagattttacttatagaaaagcagtgctaaaa
 || || ||||||| ||| ||| |||  ||||| || || |||||||| || || ||||| || | |||||||||| ||||||||||||||||||| ||||| |||||||  || | ||| |||| || | |||| |    | | | ||||      || |      ||| | ||    |  |    |     ||| ||  
CCACATATGGAGGACTGGTTTTGAAAGTAAAGAACTGCAAGGAGTTGTTTTCGATGATGTCCCCGAGGCGCTAAAGCACTGGCATGCTAGTGGCATGAAGgtatctctttagtcaaattcgtgtggaagtgtgaactttaaacttttcatggctcctaatatgttttcatggtttactatagttattactagctgccaac-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5915132|gb|AW052773.1|AW052773
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|6031340|gb|AW076197.1|AW076197
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|91876904|gb|EB406861.1|EB406861
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|32830978|gb|CD970656.1|CD970656
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|4730248|gb|AI649414.1|AI649414
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|211266796|gb|FK955963.1|FK955963
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|5739923|gb|AI947613.1|AI947613
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCCCAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|211338342|gb|FL476140.1|FL476140
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|5739928|gb|AI947618.1|AI947618
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCCCAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|13515715|gb|BG517991.1|BG517991
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|5499326|gb|AI855193.1|AI855193
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCCCAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|32828287|gb|CD967965.1|CD967965
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|10191677|gb|BE761753.1|BE761753
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|21390180|gb|BQ528229.1|BQ528229
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GNCTACATATACTCAAGTGGAAGTAGAGAAGCACA
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACA
EST: gi|1366579|gb|W59841.1|W59841
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|7216517|gb|AW562639.1|AW562639
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|60339607|gb|DN206580.1|DN206580
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|5713917|gb|AI943902.1|AI943902
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|211330942|gb|FL441405.1|FL441405
EST:     GCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: GCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|78544664|gb|DV622162.1|DV622162
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|21809577|gb|BQ667895.1|BQ667895
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|32858009|gb|CD997690.1|CD997690
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|7304515|gb|AW600454.1|AW600454
EST:     TTGAGGATGTTCCTGTGGCGTTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|78021868|gb|DV490255.1|DV490255
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|24766702|gb|CA401849.1|CA401849
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|31355926|gb|CD440283.1|CD440283
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|5456168|gb|AI833858.1|AI833858
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|32830644|gb|CD970322.1|CD970322
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|4966863|gb|AI691711.1|AI691711
EST:     TTGAGG-TGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|60399186|gb|DN232000.1|DN232000
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|5713940|gb|AI943925.1|AI943925
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCCCAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|31356801|gb|CD441158.1|CD441158
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|148938307|gb|EC882614.2|EC882614
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|5915112|gb|AW052753.1|AW052753
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|60359247|gb|DN226220.1|DN226220
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|32831486|gb|CD971164.1|CD971164
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|148939492|gb|EC884072.2|EC884072
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|5343257|gb|AI795562.1|AI795562
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: gi|60356489|gb|DN223462.1|DN223462
EST:     TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG                         GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 257

TCATATTTGGAGGATTGGATTTCAAAAGAAAGAGCTACAGGGAGTTGTCTTTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCAATACAACATACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 391

TCATATTTGGAGGATTGGATTTCAAAAGAAAGAGCTACAGGGAGTTGTCTTTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCAATACAACATACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 795

TCATATTTGGAGGATTGGATTTCAAAAGAAAGAGCTACAGGGAGTTGTCTTTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCAATACAACATACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 140

TCATATTTGGAGGATTGGATTTCAAAAGAAAGAGCTACAGGGAGTTGTCTTTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCAATACAACATACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCATATTTGGAGGATTGGATTTCAAAAGAAAGAGCTACAGGGAGTTGTCTTTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctctttgttctagttcatgtgaattatgaagtgctgattgtccatgctctagaaaaatacaacatagattttacttatagaaaagcagtgctaaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaagca