1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggtttatctatagttacaatactattcttgaatcttgataacagagtttccatgaatattttagatgtatgtaggcctttgatacagaattatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATATATGTATGGGGGGAGTCTTGGATCAATGCCAAGACACAG
species | Zea mays |
transcript | GRMZM2G574782_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCG ATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATAEST: gi|211266802|gb|FK955969.1|FK955969
genomic: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCGgtatgctatc ... tatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATA
EST: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCG ATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAAC-ACGGAAT-EST: gi|21809578|gb|BQ667896.1|BQ667896
genomic: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCGgtatgctatc ... tatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATA
EST: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCG ATTGCAGCATACCCAAAGGCAACTGCTGTGEST: gi|32862805|gb|CF002487.1|CF002487
genomic: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCGgtatgctatc ... tatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTG
EST: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCG ATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATAEST: gi|148939493|gb|EC884073.2|EC884073
genomic: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCGgtatgctatc ... tatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATA
EST: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCG ATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATAEST: gi|148956120|gb|EC901887.2|EC901887
genomic: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCGgtatgctatc ... tatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATA
EST: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCG ATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATAEST: gi|31359134|gb|CD443491.1|CD443491
genomic: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCGgtatgctatc ... tatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATA
EST: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCG ATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATAEST: gi|20507404|gb|BQ279616.1|BQ279616
genomic: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCGgtatgctatc ... tatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATA
EST: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCG ATTGCAGCATACCCAAAGGCAACTGCTGTGCEST: gi|148939957|gb|EC884685.2|EC884685
genomic: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCGgtatgctatc ... tatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTGC
EST: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCG ATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGGATAEST: gi|60351211|gb|DN218184.1|DN218184
genomic: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCGgtatgctatc ... tatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATA
EST: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCG ATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATAEST: gi|91876905|gb|EB406862.1|EB406862
genomic: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCGgtatgctatc ... tatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATA
EST: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCG ATTGCAGCATACCCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATEST: gi|26456641|gb|CA828224.1|CA828224
genomic: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCGgtatgctatc ... tatttatcagATTGCAGCATACCC-AAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAAT
EST: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCG ATTGCAGCATACCCAAAGGCAACTEST: gi|148957566|gb|EC903663.2|EC903663
genomic: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCGgtatgctatc ... tatttatcagATTGCAGCATACCCAAAGGCAACT
EST: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCG ATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATAEST: gi|31355926|gb|CD440283.1|CD440283
genomic: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCGgtatgctatc ... tatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATA
EST: CCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCG ATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATAEST: gi|12967932|gb|BG264879.1|BG264879
genomic: CCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCGgtatgctatc ... tatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATA
EST: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCG ATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATAEST: gi|149079628|gb|EE168621.2|EE168621
genomic: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCGgtatgctatc ... tatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATA
EST: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCG ATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGGACCACGGAATAEST: gi|149079514|gb|EE168492.2|EE168492
genomic: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCGgtatgctatc ... tatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATA
EST: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCG ATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATAEST: gi|109179163|gb|EC379844.1|EC379844
genomic: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCGgtatgctatc ... tatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATA
EST: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCG ATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGCAAT
genomic: TTGAGAATACCCCTTATGAGTATGAGCTCACTGACTCCCTAAGTGAGGCGgtatgctatc ... tatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGG-AAT
gtttccatgaatattttagatgtatgtaggcctttgatacagaattatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATATATGTATGGGGGGAGTCTTGGATCAATGCCAAGACACAG
ctttgat putative branch site (score: 232)
aatattttagatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtttatctatagttacaatactattcttgaatcttgataacagagtttccatgaatattttagatgtatgtaggcctttgatacagaattatttatcagATTGCAGCATACCCAAAGGCAACTGCTGTGCTTGTAAGGAACCACGGAATATATGTATGGGGGGAGTCTTGGATCAATGCCAAGACACAG
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