1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...attctagttaagttagcacaacaacatgcattcctcagtgtgttaagagtgtgcaatcgtatttttctcatgatgcaaagttatgaatacttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCAATACAACATACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATA
species | Zea mays |
transcript | GRMZM2G574782_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|6031340|gb|AW076197.1|AW076197
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|91876904|gb|EB406861.1|EB406861
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|32830978|gb|CD970656.1|CD970656
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|4730248|gb|AI649414.1|AI649414
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|211266796|gb|FK955963.1|FK955963
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|5739923|gb|AI947613.1|AI947613
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCCCAAAGGCTTCTATTTGGCEST: gi|211338342|gb|FL476140.1|FL476140
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|5739928|gb|AI947618.1|AI947618
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCCCAAAGGCTTCTATTTGGCEST: gi|13515715|gb|BG517991.1|BG517991
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|5499326|gb|AI855193.1|AI855193
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCCCAAAGGCTTCTATTTGGCEST: gi|32828287|gb|CD967965.1|CD967965
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|10191677|gb|BE761753.1|BE761753
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|21390180|gb|BQ528229.1|BQ528229
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GNCTACATATACTCAAGTGGAAGTAGAGAAGCACAEST: gi|1366579|gb|W59841.1|W59841
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACA
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|7216517|gb|AW562639.1|AW562639
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|60339607|gb|DN206580.1|DN206580
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|5713917|gb|AI943902.1|AI943902
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|211330942|gb|FL441405.1|FL441405
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: GCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|78544664|gb|DV622162.1|DV622162
genomic: GCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|21809577|gb|BQ667895.1|BQ667895
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|32858009|gb|CD997690.1|CD997690
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|7304515|gb|AW600454.1|AW600454
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGTTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|78021868|gb|DV490255.1|DV490255
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|24766702|gb|CA401849.1|CA401849
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|31355926|gb|CD440283.1|CD440283
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|5456168|gb|AI833858.1|AI833858
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|32830644|gb|CD970322.1|CD970322
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|4966863|gb|AI691711.1|AI691711
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGG-TGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|60399186|gb|DN232000.1|DN232000
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|5713940|gb|AI943925.1|AI943925
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCCCAAAGGCTTCTATTTGGCEST: gi|31356801|gb|CD441158.1|CD441158
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|148938307|gb|EC882614.2|EC882614
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|5915112|gb|AW052753.1|AW052753
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|60359247|gb|DN226220.1|DN226220
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|32831486|gb|CD971164.1|CD971164
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|148939492|gb|EC884072.2|EC884072
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|5343257|gb|AI795562.1|AI795562
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCEST: gi|60356489|gb|DN223462.1|DN223462
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
EST: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAG GTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
genomic: TTGAGGATGTTCCTGTGGCGCTAAAGAACTGGCATGCTAGTGGCATAAAGgtgtctcttt ... ttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGC
agagtgtgcaatcgtatttttctcatgatgcaaagttatgaatacttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCAATACAACATACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATA
tatttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctagttaagttagcacaacaacatgcattcctcagtgtgttaagagtgtgcaatcgtatttttctcatgatgcaaagttatgaatacttgtgattagGTCTACATATACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCAATACAACATACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATA
- - - - - - - - - caacaac
- - - - - - - - - - - - - tgcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgca