1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGTCATGTTCCCTTATGCTCGTGATAATGTACGAAAACATCTGACTTCTACATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAAgtaagtgatggagtggccccttcaatcatagatttgtacgatatagaatccagcattccagcgatgacaagtttttaagtggtactaacagtttgcgcaggttgttttgtgttattcatgttttaacaagtgagtggtcaactattcag
species | Zea mays |
transcript | GRMZM2G574782_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAA ATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCTEST: gi|6031340|gb|AW076197.1|AW076197
genomic: CATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAAgtaagtgatg ... aactattcagATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCT
EST: CATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAA ATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCTEST: gi|26457260|gb|CA828843.1|CA828843
genomic: CATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAAgtaagtgatg ... aactattcagATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCT
EST: CATTTGATTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAA ATTGAAGATGATCTACGAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCTEST: gi|32830978|gb|CD970656.1|CD970656
genomic: CATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAAgtaagtgatg ... aactattcagATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCT
EST: ATTTGA-TTTGAAGAAACTAAAGAAGACATC-AACTATTTGCGCATCC-A ATTGAAGATGATCTACAAAATGGAGTTGCT-GGGCTGTTCCAGTTCCACCCEST: gi|32828287|gb|CD967965.1|CD967965
genomic: ATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTA-TTGCGCATCCAAgtaagtgatg ... aactattcagATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCA-CC
EST: CATTTGATTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAA ATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCTEST: gi|21390180|gb|BQ528229.1|BQ528229
genomic: CATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAAgtaagtgatg ... aactattcagATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCT
EST: CATTTGATTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAA ATTGAAGATGATCTACGAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCTEST: gi|7216517|gb|AW562639.1|AW562639
genomic: CATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAAgtaagtgatg ... aactattcagATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCT
EST: CATTTGATTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAA ATTGAAGATGATCTACGAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCTEST: gi|32858009|gb|CD997690.1|CD997690
genomic: CATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAAgtaagtgatg ... aactattcagATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCT
EST: CATTTGATTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAA ATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCTEST: gi|31355926|gb|CD440283.1|CD440283
genomic: CATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAAgtaagtgatg ... aactattcagATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCT
EST: CATTTGATTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAA ATTGAAGATGATCTACGAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCTEST: gi|5847181|gb|AW000260.1|AW000260
genomic: CATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAAgtaagtgatg ... aactattcagATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCT
EST: CATTTGACTTTGAGGAAACTAAA-AAGAC-TCAAACTATTGCGCATCCAA ATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCTEST: gi|32830644|gb|CD970322.1|CD970322
genomic: CATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAAgtaagtgatg ... aactattcagATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCT
EST: CATTTGATTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAA ATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCTEST: gi|31356801|gb|CD441158.1|CD441158
genomic: CATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAAgtaagtgatg ... aactattcagATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCT
EST: CATTTGATTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAA ATTGAAGATGATCTACGAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCTEST: gi|5915112|gb|AW052753.1|AW052753
genomic: CATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAAgtaagtgatg ... aactattcagATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCT
EST: CATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAA ATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCTEST: gi|32831486|gb|CD971164.1|CD971164
genomic: CATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAAgtaagtgatg ... aactattcagATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCT
EST: CATTTGATTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAA ATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCTEST: gi|5343257|gb|AI795562.1|AI795562
genomic: CATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAAgtaagtgatg ... aactattcagATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCT
EST: CATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAA ATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCT
genomic: CATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAAgtaagtgatg ... aactattcagATTGAAGATGATCTACAAAATGGAGTTGCTGGGGCTGTTCCAGTTCCACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCATGTTCCCTTATGCTCGTGATAATGTACGAAAACATCTGACTTCTACATTTGACTTTGAGGAAACTAAAGAAGACATCAAACTATTGCGCATCCAAgtaagtgatggagtggccccttcaatcatagatttgtacgatatagaatccagcattccagcgatgacaagtttttaagtggtactaacagtttgcgcaggttgttttgtgttattcatgttttaacaagtgagtggtcaactattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG