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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatttgctcatcgcattggttgtgtttttttttgttctcatatttttctacctagaaaatttggaattattctctgtgtctatttaaccatatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACAATCATGGTTTCCGCACTATCAAATCATTCAGCGAGATCTGAGGAATCTG

Basic information

species Zea mays
transcript GRMZM2G574782_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G574782_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os11g29370.1 (Oryza sativa), 3'ss of exon 11
------------------------------------------------------------------------------------------tatttgctcatcgcattggttgtgtttttttttgttctcatatttttctacctag-aaaatttggaattattctctgtgtctatttaaccatatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACAATCATGGTTTCCGCACTATCAAATCATTCAGCGAGATCTGAGGAATCTG
                                                                                          |   |||   ||  | |  |    |  |||   | | ||||   ||||        || ||||   |||||  | |   |       |   | | |||||||||||||||| |||||||||||||||||||||||||| || || ||||| |||||||||||||| |||||||| || || || ||||||||| |||  | 
gtaatgactagttctggtcaaatattcatgggaatgttcatgcttttatttggtggataagatgctttagctttaaccagtcgacctctctgggtgccattcctaatcatgtgatcatttcaagctatcattcgtttccttgggtcaagatttcatattatatttttctttcccgacattttctttttcagGTTTTGAGGTAATAATCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAATCATGGTTTCCGGACTATCAAGTCGTTTAGTGAGATCTGAAGAAGGTA

upper sequence: GRMZM2G574782_T01 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA12G35390.1 (Glycine max), 3'ss of exon 11
tatttgctcatcgcattggttgtgtttttttttgttct-catatttttctacctagaaaatttggaattat-tctctgtgtctatttaaccata-------tctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACAATCATGGTTTCCGCACTATCAAATCATTCAGCGAGATCTGAGGAATCTG
            |   | |  |  |||   |  | ||  | |||  | | |  ||  |||||    ||| | |||     |  ||||    | |       | |||||||||| ||||||||||| || ||||| || |||||||  || || |||||||||||||| |||   || |||||||| |||   ||||||| ||     | 
---------ggtgtggtagaggaatttccataggatccacttataataccaaataagaaattgcttattttgtctgcacataaatttgttgacaattatcctgtttcagGTTTGGAGGTGATAATTTCTATTCGACCTGGAAATGGACCCCTCCCTGACAATCATGGCTTCAAGACAATCAAATCCTTCTCGGAGATCTAAGATCAGTA

upper sequence: GRMZM2G574782_T01 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA13G35120.3 (Glycine max), 3'ss of exon 9
tatttgctcatcgcattggttgtgtttttttttgttctca--tatttttctacctagaaaatttggaattat-tctctgtgtctatttaaccata--------tctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACAATCATGGTTTCCGCACTATCAAATCATTCAGCGAGATCTGAGG--AATCTG
            |   | |  |  |||   || | || ||  |||    | |  ||  |||||    ||| | |||     |  ||||    | |        | |||||||||| ||||||||||| || ||||| || |||||||  || || |||||||||||||| |||   || |||||||| |||   ||||||| ||   |||   
-----------tgtggtagaggaatttcccttggatcccacttataagaccaaataagaaattgcttattttgtctgcacataaatttgctgacaaattgttctgtttcagGTTTGGAGGTGATAATTTCTATTCGACCTGGAAATGGACCCCTCCCTGACAATCATGGCTTCAAGACAATCAAATCCTTCTCGGAGATCTAAGACCAATT--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32937024|gb|CF041843.1|CF041843
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|91876904|gb|EB406861.1|EB406861
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|213180010|gb|FM195936.1|FM195936
EST:     TGTCTTCCAAGAAGCCANNGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: TGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|6095563|gb|AW120230.1|AW120230
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|4730248|gb|AI649414.1|AI649414
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|211266796|gb|FK955963.1|FK955963
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|5739923|gb|AI947613.1|AI947613
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|211338342|gb|FL476140.1|FL476140
EST:     CTTATTCATAACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|5739928|gb|AI947618.1|AI947618
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCCCTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|4610001|gb|AI600840.1|AI600840
EST:     CGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|5499326|gb|AI855193.1|AI855193
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|10191677|gb|BE761753.1|BE761753
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|16379686|gb|BI993092.1|BI993092
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|60339607|gb|DN206580.1|DN206580
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|110202787|gb|EC884684.1|EC884684
EST:     TTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|5713917|gb|AI943902.1|AI943902
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|13515714|gb|BG517990.1|BG517990
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|211330942|gb|FL441405.1|FL441405
EST:     CTTATTCATAACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|211266795|gb|FK955962.1|FK955962
EST:     CTTATTCATAACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|78544664|gb|DV622162.1|DV622162
EST:     CTTATTCATAACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|113701301|gb|EE678805.1|EE678805
EST:     CTTATTCATAACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|21809577|gb|BQ667895.1|BQ667895
EST:     CTTATTCATAACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCAATCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|7304515|gb|AW600454.1|AW600454
EST:     CTTATTCATAACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|78021868|gb|DV490255.1|DV490255
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|24766702|gb|CA401849.1|CA401849
EST:     CTTATTCATAACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|5456168|gb|AI833858.1|AI833858
EST:     CTTATTCATAACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|33942406|gb|CF349006.1|CF349006
EST:     GTTATTCATCACCGATGTCTTCCAAGAAGCCATTGGTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCCTCCATTCGCCCGGGAAATGCCCCACTTCCTGAC
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAAT-CTCCATTCGCCCGGGAAATGCCCCACTTCCTGAC
EST: gi|4966863|gb|AI691711.1|AI691711
EST:     CTTATTCATAACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|60359199|gb|DN226172.1|DN226172
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|60399186|gb|DN232000.1|DN232000
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|5713940|gb|AI943925.1|AI943925
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCCCTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|31356801|gb|CD441158.1|CD441158
EST:     CTTATTCATAACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|148938307|gb|EC882614.2|EC882614
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|32859117|gb|CD998798.1|CD998798
EST:     ACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: ACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|5915112|gb|AW052753.1|AW052753
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|32936056|gb|CF040868.1|CF040868
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|60359247|gb|DN226220.1|DN226220
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|148939492|gb|EC884072.2|EC884072
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
EST: gi|5343257|gb|AI795562.1|AI795562
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTNTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCC
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCC
EST: gi|60356489|gb|DN223462.1|DN223462
EST:     CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTG                         GTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA
genomic: CTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 181

AGTTATTTTGAGATCTCTCAGTCACTGGGCGTGGACAGTCCATCTCAAATCTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACAATCATGGTTTCCGCACTATCAAATCATTCAGCGAGATCTGAGGAATCTG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 260

AGTTATTTTGAGATCTCTCAGTCACTGGGCGTGGACAGTCCATCTCAAATCTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACAATCATGGTTTCCGCACTATCAAATCATTCAGCGAGATCTGAGGAATCTG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 878

AGTTATTTTGAGATCTCTCAGTCACTGGGCGTGGACAGTCCATCTCAAATCTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACAATCATGGTTTCCGCACTATCAAATCATTCAGCGAGATCTGAGGAATCTG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 119

AGTTATTTTGAGATCTCTCAGTCACTGGGCGTGGACAGTCCATCTCAAATCTTATTCATCACCGATGTCTTCCAAGAAGCCATTGCTGCTAAAAACGCTGgtaatgacta ... tatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACAATCATGGTTTCCGCACTATCAAATCATTCAGCGAGATCTGAGGAATCTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctacctagaaaatttggaattattctctgtgtctatttaaccatatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACAATCATGGTTTCCGCACTATCAAATCATTCAGCGAGATCTGAGGAATCTG
                                    atttaac  putative branch site (score: 119)
                                             tatctttc  putative PPT
          aaaatttggaattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatttgctcatcgcattggttgtgtttttttttgttctcatatttttctacctagaaaatttggaattattctctgtgtctatttaaccatatctttcagGTTTTGAGGTGATAATCTCCATTCGCCCGGGAAATGCCCCACTTCCTGACAATCATGGTTTCCGCACTATCAAATCATTCAGCGAGATCTGAGGAATCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - tgctcat
- - - - - - - - - - tgtgttt
- - - - - - - - - - - - - - -ttttgtt