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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctcttgatttcttgttgcagcagcctgtacttctataaaagattcaacacaagaaaaaagattttgttctctcaaatacacaaaaactaaagatatatttcttgtcccgttcatctgccaatctattaaaaagttgagacatcttttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGTGGACAGTCCATCTCAAATCTTATTCATCACCGATGTCTTCCAAGAAGCC

Basic information

species Zea mays
transcript GRMZM2G574782_T01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G574782_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os11g29370.1 (Oryza sativa), 3'ss of exon 10
gtaagctcttgatttcttgttgcagcagcctgtacttctataaaagattcaacacaagaaaaaagattttgttctctcaaatacacaaaaactaaagatatatttcttgtcccgttcat-ctgccaatctattaaaaagttgaga---catcttttat---ttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGTGGACAGTCCATCTCAAATCTTATTCATCACCGATGTCTTCCAAGAAGCC
                                                                                    |  |   ||      || | | ||   | |   || |||  ||    |    || ||  ||   |||||   ||      ||| |||||||||||||||||||| || |||||||| || || ||||| || |||||||||||  |||| |||||||| ||||||||||||||||||||||| 
----------------------------------------------------------------------------------gtatgatttcttgttccatttctatttctctgcatatactgaaaaatggtagtgaaattatgattccatctcgcataaaccgcagTAACAAAAGAGAAACAAGGAGCTACTTTGAGATTTCGCAATCACTTGGGGTGGACAGTCCTGCTCAGATCTTATTTATCACCGATGTCTTCCAAGAAGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6031340|gb|AW076197.1|AW076197
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|91876904|gb|EB406861.1|EB406861
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTTTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|6095563|gb|AW120230.1|AW120230
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|32830978|gb|CD970656.1|CD970656
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCA
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCA
EST: gi|4730248|gb|AI649414.1|AI649414
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|211266796|gb|FK955963.1|FK955963
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|5739923|gb|AI947613.1|AI947613
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCCCAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCCCTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|211338342|gb|FL476140.1|FL476140
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGTGTTATTTTGAGATCTCTCAGTCACTCGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|5739928|gb|AI947618.1|AI947618
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCCCTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|13515715|gb|BG517991.1|BG517991
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAG
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAG
EST: gi|5499326|gb|AI855193.1|AI855193
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|32828287|gb|CD967965.1|CD967965
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCA
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCA
EST: gi|10191677|gb|BE761753.1|BE761753
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAANCAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|1366579|gb|W59841.1|W59841
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTT
EST: gi|16379686|gb|BI993092.1|BI993092
EST:     GTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: GTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|60339607|gb|DN206580.1|DN206580
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|110202787|gb|EC884684.1|EC884684
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|5713917|gb|AI943902.1|AI943902
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|211330942|gb|FL441405.1|FL441405
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTCGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|211266795|gb|FK955962.1|FK955962
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTCGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|78544664|gb|DV622162.1|DV622162
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTCGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|113701301|gb|EE678805.1|EE678805
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAGGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTCGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|21809577|gb|BQ667895.1|BQ667895
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTCGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|7304515|gb|AW600454.1|AW600454
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCCCAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTCGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|78021868|gb|DV490255.1|DV490255
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|24766702|gb|CA401849.1|CA401849
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTCGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|31355926|gb|CD440283.1|CD440283
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGGAGT-ATTTTGAGATCTCTCAGTCACTCGGCG
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGG-AGTTATTTTGAGATCTCTCAGTCACTGGGCG
EST: gi|5456168|gb|AI833858.1|AI833858
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTCGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|33942406|gb|CF349006.1|CF349006
EST:     TGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|4966863|gb|AI691711.1|AI691711
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTCGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|60359199|gb|DN226172.1|DN226172
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|60399186|gb|DN232000.1|DN232000
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|5713940|gb|AI943925.1|AI943925
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCCCAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|31356801|gb|CD441158.1|CD441158
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTCGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|148938307|gb|EC882614.2|EC882614
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|5915112|gb|AW052753.1|AW052753
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|60359247|gb|DN226220.1|DN226220
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|148939492|gb|EC884072.2|EC884072
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|5343257|gb|AI795562.1|AI795562
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
EST: gi|60356489|gb|DN223462.1|DN223462
EST:     TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGG                         AAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT
genomic: TACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 280

ACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCAATACAACATACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGTGGACAGTCCATCTCAAATCTTATTCATCACCGATGTCTTCCAAGAAGCC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 481

ACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCAATACAACATACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGTGGACAGTCCATCTCAAATCTTATTCATCACCGATGTCTTCCAAGAAGCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1030

ACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCAATACAACATACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGTGGACAGTCCATCTCAAATCTTATTCATCACCGATGTCTTCCAAGAAGCC


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 185

ACTCAAGTGGAAGTAGAGAAGCACAAAGGCTTCTATTTGGCAATACAACATACGGTGACCTGCGAAAGTTCCTGTGTGGGTATTTTGATACCACAACTGGgtaagctctt ... ttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGTGGACAGTCCATCTCAAATCTTATTCATCACCGATGTCTTCCAAGAAGCC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtcccgttcatctgccaatctattaaaaagttgagacatcttttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGTGGACAGTCCATCTCAAATCTTATTCATCACCGATGTCTTCCAAGAAGCC
                                         tcttttattt  CT-rich tract
                   aatctattaaaaagtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagctcttgatttcttgttgcagcagcctgtacttctataaaagattcaacacaagaaaaaagattttgttctctcaaatacacaaaaactaaagatatatttcttgtcccgttcatctgccaatctattaaaaagttgagacatcttttatttacagAAACAAAAGAGAAACAAGGAGTTATTTTGAGATCTCTCAGTCACTGGGCGTGGACAGTCCATCTCAAATCTTATTCATCACCGATGTCTTCCAAGAAGCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC