1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttgtgaatgctccctcctttttaatttttctgttgcttctgcttgttttgatctgaaaactctagtttcctttggtgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGACTTGCATCGCAACAATGCTCATCCCTGGTGCAAAGGAGTTCAGA
species | Zea mays |
transcript | GRMZM2G574782_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|76289240|gb|DV028808.1|DV028808
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCATAGCCATGGAATAGAGEST: gi|211266802|gb|FK955969.1|FK955969
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|211264368|gb|FK955956.1|FK955956
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|21809578|gb|BQ667896.1|BQ667896
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|211266798|gb|FK955965.1|FK955965
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|148938308|gb|EC882615.2|EC882615
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|211266801|gb|FK955968.1|FK955968
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|148939493|gb|EC884073.2|EC884073
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|8368441|gb|BE051386.1|BE051386
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: TGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|148956120|gb|EC901887.2|EC901887
genomic: TGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|31359134|gb|CD443491.1|CD443491
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|20507404|gb|BQ279616.1|BQ279616
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|6021244|gb|AW066172.1|AW066172
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGNCATTCACAGCCATGGAATAGAGEST: gi|148939957|gb|EC884685.2|EC884685
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|60351211|gb|DN218184.1|DN218184
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|91876905|gb|EB406862.1|EB406862
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|26456641|gb|CA828224.1|CA828224
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|148957566|gb|EC903663.2|EC903663
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|211264372|gb|FK955960.1|FK955960
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|12967932|gb|BG264879.1|BG264879
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|149079628|gb|EE168621.2|EE168621
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|149079514|gb|EE168492.2|EE168492
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGEST: gi|211266805|gb|FK955972.1|FK955972
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
EST: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAG GCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
genomic: GGCCAAACAAGCCTCCTAAGTGCACGGACTGTGCTCCTCTGTTCATGAAGgtttgtgaat ... tgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAG
tgttgcttctgcttgttttgatctgaaaactctagtttcctttggtgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGACTTGCATCGCAACAATGCTCATCCCTGGTGCAAAGGAGTTCAGA
ttttgat putative branch site (score: 298)
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgaatgctccctcctttttaatttttctgttgcttctgcttgttttgatctgaaaactctagtttcctttggtgttttgaagGCGTATCTGATGAGAGGAGCTGGGGCTGTCATTCACAGCCATGGAATAGAGACTTGCATCGCAACAATGCTCATCCCTGGTGCAAAGGAGTTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG