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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaattattggattggtgataaccacagttgttcacttgcatatttgagtgcataccataaatcaagccttttcttcgtgcag

Basic information

species Zea mays
transcript GRMZM2G540403_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G540403_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g15860.1 (Oryza sativa), 5'ss of exon 9
ATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaattattggattggtgataaccacagttgttcacttgcatatttgagtg--catacca---taaatcaagccttttcttcgtgcag
||||| ||||||||||||||||| ||||| ||||| || || ||||| ||||| ||||||||||| |||||||||| ||     |   || | | |  |||  |||    |||| | |||||    |||  ||   |||| || |  |||| ||  | |||
ATTTTCCTTCTTGGTGCTGTTGCCAAACTGGGTGCGACTGTTGTTACATATCCTCTTCTAGTTGTGAAGgtgattatttga-acaccagttacagcagcagccgtttctgtgcacaattgagcagacatgtcaagttaaaccatgttttttttttctacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149071943|gb|EE160330.2|EE160330
EST:     TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|211285343|gb|FL118292.1|FL118292
EST:     TTGCGAAACTTGGTGCAA-CGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|4681209|gb|AI629879.1|AI629879
EST:     CTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTATCGATGACAAGAGGCATCGCTAC
genomic: CTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|32929166|gb|CF033978.1|CF033978
EST:     TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|50330442|gb|CO525568.1|CO525568
EST:     AAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: AAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|60343577|gb|DN210550.1|DN210550
EST:     TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|5714034|gb|AI944019.1|AI944019
EST:     TATCCCCTTTTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCCCATGATTACCGATGCCAAGAGGCATCGCTAC
genomic: TATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|86471991|gb|DY238361.1|DY238361
EST:     TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|24934302|gb|CA452520.1|CA452520
EST:     TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|91877626|gb|EB407583.1|EB407583
EST:     TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|60340184|gb|DN207157.1|DN207157
EST:     TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|32929640|gb|CF034452.1|CF034452
EST:     TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|88756339|gb|DY540480.1|DY540480
EST:     TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|78121536|gb|DV539920.1|DV539920
EST:     TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|32935002|gb|CF039814.1|CF039814
EST:     TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|211285345|gb|FL118294.1|FL118294
EST:     TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|29543455|gb|CB603851.1|CB603851
EST:     TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|71422917|gb|DR805896.1|DR805896
EST:     TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGCCAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|32868675|gb|CF008357.1|CF008357
EST:     TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|71422924|gb|DR805897.1|DR805897
EST:     TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|211285341|gb|FL118290.1|FL118290
EST:     TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: gi|211378309|gb|FL452851.1|FL452851
EST:     TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG                         GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC