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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgctgttgctcgccgtttctgttgcttcttagtcgtatagtgttgctattttacaattttatctgcttctag

Basic information

species Zea mays
transcript GRMZM2G540403_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G540403_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g15860.1 (Oryza sativa), 5'ss of exon 7
TTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgc-tgttgctcgccgtttctgttgcttcttagtcgtata-gtgttgctattttacaattttatctgcttctag
 ||||||| || ||||||||| ||||| || | |||||||||||||| ||| |||| |||||||| ||||||||||   ||| ||      |||   |   || ||  |  | ||   |||  | |||     ||| |||||     ||
ATTCAGGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATGgtaagtcttatgtcgcattttcttttgctaagttatttcttttttacaagttattgtttccatgtttcatctgtcatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211285343|gb|FL118292.1|FL118292
EST:     CTCTTATCATG                         GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
genomic: CTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: gi|32929166|gb|CF033978.1|CF033978
EST:     AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG                         GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: gi|60343577|gb|DN210550.1|DN210550
EST:     AAAGGGGTAATTCCGGCTCTTATCATG                         GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
genomic: AAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: gi|78120502|gb|DV538886.1|DV538886
EST:     AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG                         GTTAGCAATCC
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCC
EST: gi|148952677|gb|EC898511.2|EC898511
EST:     AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG                         GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTG
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTG
EST: gi|24934302|gb|CA452520.1|CA452520
EST:     AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG                         GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: gi|60340184|gb|DN207157.1|DN207157
EST:     AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG                         GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: gi|71766550|gb|DR964487.1|DR964487
EST:     AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG                         GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: gi|32929640|gb|CF034452.1|CF034452
EST:     AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG                         GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: gi|78121536|gb|DV539920.1|DV539920
EST:     AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG                         GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: gi|149027549|gb|EE046558.2|EE046558
EST:     AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG                         GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: gi|32935002|gb|CF039814.1|CF039814
EST:     AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG                         GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: gi|211285345|gb|FL118294.1|FL118294
EST:     CTCTTATCATG                         GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
genomic: CTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: gi|71422917|gb|DR805896.1|DR805896
EST:     GGGTAATTCCGGCTTTTATCATG                         GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
genomic: GGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: gi|32868675|gb|CF008357.1|CF008357
EST:     AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG                         GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: gi|71422924|gb|DR805897.1|DR805897
EST:     AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG                         GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: gi|211285341|gb|FL118290.1|FL118290
EST:     CTCTTATCATG                         GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
genomic: CTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: gi|166600046|gb|EG079333.1|EG079333
EST:     TCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG                         GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
genomic: TCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: gi|211285344|gb|FL118293.1|FL118293
EST:     AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG                         GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA