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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgttggagataatttggcactttcatctgcccatctatactagtattcctatggtttatgataaaactctaacctgacattgcaaacattcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG

Basic information

species Zea mays
transcript GRMZM2G540403_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G540403_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g15860.1 (Oryza sativa), 3'ss of exon 8
atgttggagataatttggcactt-tcatctgcccatctatactagtattcctatggt------ttatgataaaa----ctctaacctgacattgcaaacattcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG
         | |   | | | || | || ||| | |  |||||| |||| || || |       |||| || |        | | || ||  || ||| || ||| |||||||||| ||||||||||||||||| ||||| ||||| || || ||||| ||||| ||||||||||| |||
---------aaacactagtatttcttatatgctccta-atactactatttctttgttagttagctatgttatagaccgtcttcatctcacgctgtaaa-atccttgttcagATTTTCCTTCTTGGTGCTGTTGCCAAACTGGGTGCGACTGTTGTTACATATCCTCTTCTAGTTGTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149071943|gb|EE160330.2|EE160330
EST:     AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAA                         ATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
genomic: AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAAgtaagctttt ... tcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
EST: gi|211285343|gb|FL118292.1|FL118292
EST:     AGAGACGAGCCTCTAATTTCAAGGGAGCTGATGGATTGACTGCTCTTGAA                         ATTNTTMTTCTTGGTGCTGTTGCGAAACTTGGTGCAA-CGTCGTTACGTAT
genomic: AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAAgtaagctttt ... tcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
EST: gi|32929166|gb|CF033978.1|CF033978
EST:     AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAA                         ATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
genomic: AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAAgtaagctttt ... tcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
EST: gi|60343577|gb|DN210550.1|DN210550
EST:     AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAA                         ATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
genomic: AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAAgtaagctttt ... tcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
EST: gi|24934302|gb|CA452520.1|CA452520
EST:     AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAA                         ATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
genomic: AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAAgtaagctttt ... tcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
EST: gi|91877626|gb|EB407583.1|EB407583
EST:     GAGACGAGCCTCTAA-TTTAAGGGGAGCGGATGGATTGACTGCTCTTGAA                         ATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
genomic: GAGACGAGCCTCTAATTTTAA-GGGAGCTGATGGATTGACTGCTCTTGAAgtaagctttt ... tcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
EST: gi|60340184|gb|DN207157.1|DN207157
EST:     AGAGACGAGCCTCTAATTTCAAGGGAGCTGATGGATTGACTGCTCTTGAA                         ATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
genomic: AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAAgtaagctttt ... tcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
EST: gi|32929640|gb|CF034452.1|CF034452
EST:     AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAA                         ATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
genomic: AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAAgtaagctttt ... tcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
EST: gi|78121536|gb|DV539920.1|DV539920
EST:     AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAA                         ATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
genomic: AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAAgtaagctttt ... tcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
EST: gi|32935002|gb|CF039814.1|CF039814
EST:     AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAA                         ATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
genomic: AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAAgtaagctttt ... tcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
EST: gi|211285345|gb|FL118294.1|FL118294
EST:     AGAGACGAGCCTCTAATTTCAAGGGAGCTGATGGATTGACTGCTCTTGAA                         ATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
genomic: AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAAgtaagctttt ... tcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
EST: gi|29543455|gb|CB603851.1|CB603851
EST:     AGAGACGAGCCTCTATTTTTAAGGGAGCTGATGGATTGACTGCTCTTGAA                         ATTTTTCTTCTGGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
genomic: AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAAgtaagctttt ... tcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
EST: gi|71422917|gb|DR805896.1|DR805896
EST:     AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAA                         ATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
genomic: AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAAgtaagctttt ... tcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
EST: gi|32868675|gb|CF008357.1|CF008357
EST:     AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAA                         ATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
genomic: AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAAgtaagctttt ... tcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
EST: gi|71422924|gb|DR805897.1|DR805897
EST:     AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAA                         ATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
genomic: AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAAgtaagctttt ... tcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
EST: gi|211285341|gb|FL118290.1|FL118290
EST:     AGAGACGAGCCTCTAATTTCAAGGGAGCTGATGGATTGACTGCTCTTGAA                         ATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
genomic: AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAAgtaagctttt ... tcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
EST: gi|211285344|gb|FL118293.1|FL118293
EST:     AGAGACGAGCCTCTAATTTCAAGGGAGCTGATGGATTGACTGCTCTTGAA                         ATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
genomic: AGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTGCTCTTGAAgtaagctttt ... tcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
EST: gi|211378309|gb|FL452851.1|FL452851
EST:     ATTGACTGCTCTTGAA                         ATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT
genomic: ATTGACTGCTCTTGAAgtaagctttt ... tcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcctatggtttatgataaaactctaacctgacattgcaaacattcttattcagATTTTTCTTCTTGGTGCTGTTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG
                                            ttcttattc  CT-rich tract
          tttatgataaaact  TA-rich tract