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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttggtgccatgttaggtttcaaatctaacccgcttcaatttgcttgggcctacaaggctttgttgttgctgttggttttctgactaggtttaactccagTTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG

Basic information

species Zea mays
transcript GRMZM2G540403_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G540403_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g15860.1 (Oryza sativa), 3'ss of exon 6
---gttggtgccatgttaggtttcaaatctaacccgcttcaatttgcttgggcctacaaggctttgttgttgctgttggttttctgactaggtttaactccagTTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG
        || | |  || ||     || ||  |    |  |  ||||   |  |   || |||||||   |   | ||||   |||||  ||||  || ||| ||||||| || ||||||||| ||||| || | |||||||||||||| ||| |||| |||||||| |||
gtaaaacttgtcctcctaagtacttcatatagtcaatatgcaagtgctaatgattc--agactttgtttggggcat-ggttgattgactccgtttggctgcagATTCAGGACCTTTACAAAGAAGCTGGATTTTTGGGCTTCTGGAAAGGTGTAGTTCCAGCTCTTATTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929166|gb|CF033978.1|CF033978
EST:     CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACAATTGATGTT                         TTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
genomic: CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTTgtaagtacaa ... ttaactccagTTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
EST: gi|149071944|gb|EE160331.2|EE160331
EST:     CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTT                         TTTCAGGAACTCTACAAAGAATCTGG
genomic: CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTTgtaagtacaa ... ttaactccagTTTCAGGAACTCTACAAAGAATCTGG
EST: gi|78120502|gb|DV538886.1|DV538886
EST:     CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTT                         TTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
genomic: CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTTgtaagtacaa ... ttaactccagTTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
EST: gi|148952677|gb|EC898511.2|EC898511
EST:     CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTT                         TTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
genomic: CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTTgtaagtacaa ... ttaactccagTTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
EST: gi|91877627|gb|EB407584.1|EB407584
EST:     CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTT                         TTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
genomic: CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTTgtaagtacaa ... ttaactccagTTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
EST: gi|24934302|gb|CA452520.1|CA452520
EST:     CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTT                         TTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
genomic: CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTTgtaagtacaa ... ttaactccagTTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
EST: gi|60340184|gb|DN207157.1|DN207157
EST:     CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACAATTGATGTT                         TTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
genomic: CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTTgtaagtacaa ... ttaactccagTTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
EST: gi|71766550|gb|DR964487.1|DR964487
EST:     CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTT                         TTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
genomic: CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTTgtaagtacaa ... ttaactccagTTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
EST: gi|32929640|gb|CF034452.1|CF034452
EST:     CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACAATTGATGTT                         TTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
genomic: CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTTgtaagtacaa ... ttaactccagTTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
EST: gi|76936044|gb|DV174582.1|DV174582
EST:     CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTT                         TTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
genomic: CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTTgtaagtacaa ... ttaactccagTTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
EST: gi|78121536|gb|DV539920.1|DV539920
EST:     AAAACGATTGATGTT                         TTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
genomic: AAAACGATTGATGTTgtaagtacaa ... ttaactccagTTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
EST: gi|149027549|gb|EE046558.2|EE046558
EST:     CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTT                         TTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
genomic: CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTTgtaagtacaa ... ttaactccagTTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
EST: gi|32868675|gb|CF008357.1|CF008357
EST:     CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACAATTGATGTT                         TTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
genomic: CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTTgtaagtacaa ... ttaactccagTTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
EST: gi|71422924|gb|DR805897.1|DR805897
EST:     CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTT                         TTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
genomic: CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTTgtaagtacaa ... ttaactccagTTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
EST: gi|71448089|gb|DR829139.1|DR829139
EST:     CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTT                         TTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAG
genomic: CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTTgtaagtacaa ... ttaactccagTTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAG
EST: gi|211285344|gb|FL118293.1|FL118293
EST:     CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATATAAAACAATTGATGTT                         TTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA
genomic: CCCTTGAAGCTGCTACAGCTGAAAACGCTCCATACAAAACGATTGATGTTgtaagtacaa ... ttaactccagTTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggcctacaaggctttgttgttgctgttggttttctgactaggtttaactccagTTTCAGGAACTCTACAAAGAATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG
                                            tttaact  TA-rich tract