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gtaagtcgctgttgctcgccgtttctgttgcttcttagtcgtatagtgttgctattttacaattttatctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAATTGAAGAAGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTG
species | Zea mays |
transcript | GRMZM2G540403_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCTTATCATG GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAAEST: gi|32929166|gb|CF033978.1|CF033978
genomic: CTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAAEST: gi|60343577|gb|DN210550.1|DN210550
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: AAAGGGGTAATTCCGGCTCTTATCATG GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAAEST: gi|78120502|gb|DV538886.1|DV538886
genomic: AAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG GTTAGCAATCCEST: gi|148952677|gb|EC898511.2|EC898511
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCC
EST: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGEST: gi|24934302|gb|CA452520.1|CA452520
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTG
EST: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAAEST: gi|60340184|gb|DN207157.1|DN207157
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAAEST: gi|71766550|gb|DR964487.1|DR964487
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAAEST: gi|32929640|gb|CF034452.1|CF034452
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAAEST: gi|78121536|gb|DV539920.1|DV539920
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAAEST: gi|149027549|gb|EE046558.2|EE046558
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAAEST: gi|32935002|gb|CF039814.1|CF039814
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAAEST: gi|211285345|gb|FL118294.1|FL118294
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: CTCTTATCATG GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAAEST: gi|71422917|gb|DR805896.1|DR805896
genomic: CTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: GGGTAATTCCGGCTTTTATCATG GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAAEST: gi|32868675|gb|CF008357.1|CF008357
genomic: GGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAAEST: gi|71422924|gb|DR805897.1|DR805897
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAAEST: gi|211285341|gb|FL118290.1|FL118290
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: CTCTTATCATG GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAAEST: gi|166600046|gb|EG079333.1|EG079333
genomic: CTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: TCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAAEST: gi|211285344|gb|FL118293.1|FL118293
genomic: TCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
EST: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATG GTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
genomic: AATCTGGAGTTCTTGGCTTCTGGAAAGGGGTAATTCCGGCTCTTATCATGgtaagtcgct ... ctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAA
tctgttgcttcttagtcgtatagtgttgctattttacaattttatctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAATTGAAGAAGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTG
ttttatctgcttct CT-rich tract
tattttacaattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcgctgttgctcgccgtttctgttgcttcttagtcgtatagtgttgctattttacaattttatctgcttctagGTTAGCAATCCCGCAATTCAGTTCATGCTATATGAGACTCTTCTGAAGAAATTGAAGAAGAGACGAGCCTCTAATTTTAAGGGAGCTGATGGATTGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA