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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGTCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatatgtttcttctctgctacctacttttagtgcagaactggagattatctggcatagcaatagcattgatacttcattctgtttgcag

Basic information

species Zea mays
transcript GRMZM2G540403_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G540403_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g15860.1 (Oryza sativa), 5'ss of exon 5
CTGTGTCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcat--------------atgtttcttctctgctacctacttttagtgcagaactggagattatctggcatagcaatagcattgatacttcattct-gtttgcag
 ||||| |||||||| ||||||||||| ||||||||  ||||||||||||||||||| || |                | ||  ||| |  ||  |||||||||||| |  |   || |||   ||||| | |  |    |  ||| |||||||| || |||||
ATGTGTTAATGTACTTCTCACAAACCCAATTTGGGTAATTGTTACACGAATGCAAgtaagtaatgcacattattgcagtattatttcccaactgactacttttagtgtaata--agaaattcagtggcacatcc-tgaagt--ataattcattcttgtctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929166|gb|CF033978.1|CF033978
EST:     ACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGGATGCAA                         ACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
genomic: ACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatat ... ctgtttgcagACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
EST: gi|149071944|gb|EE160331.2|EE160331
EST:     TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAA                         ACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
genomic: TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatat ... ctgtttgcagACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
EST: gi|78120502|gb|DV538886.1|DV538886
EST:     TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAA                         ACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
genomic: TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatat ... ctgtttgcagACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
EST: gi|88756340|gb|DY540481.1|DY540481
EST:     TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAA                         ACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
genomic: TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatat ... ctgtttgcagACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
EST: gi|148952677|gb|EC898511.2|EC898511
EST:     TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAA                         ACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
genomic: TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatat ... ctgtttgcagACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
EST: gi|91877627|gb|EB407584.1|EB407584
EST:     TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAA                         ACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
genomic: TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatat ... ctgtttgcagACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
EST: gi|24934302|gb|CA452520.1|CA452520
EST:     ACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAA                         ACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
genomic: ACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatat ... ctgtttgcagACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
EST: gi|60340184|gb|DN207157.1|DN207157
EST:     TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGGATGCAA                         ACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
genomic: TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatat ... ctgtttgcagACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
EST: gi|71766550|gb|DR964487.1|DR964487
EST:     TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAA                         ACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
genomic: TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatat ... ctgtttgcagACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
EST: gi|148964459|gb|EC905815.2|EC905815
EST:     TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAA                         ACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
genomic: TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatat ... ctgtttgcagACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
EST: gi|32929640|gb|CF034452.1|CF034452
EST:     ACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGGATGCAA                         ACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
genomic: ACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatat ... ctgtttgcagACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
EST: gi|76936044|gb|DV174582.1|DV174582
EST:     TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAA                         ACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
genomic: TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatat ... ctgtttgcagACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
EST: gi|148957275|gb|EC903307.2|EC903307
EST:     TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAA                         ACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
genomic: TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatat ... ctgtttgcagACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
EST: gi|149027549|gb|EE046558.2|EE046558
EST:     TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAA                         ACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
genomic: TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatat ... ctgtttgcagACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
EST: gi|149013466|gb|EE042980.2|EE042980
EST:     TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAA                         ACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
genomic: TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatat ... ctgtttgcagACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
EST: gi|32868675|gb|CF008357.1|CF008357
EST:     TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGGATGCAA                         ACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAANNNNNNN
genomic: TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatat ... ctgtttgcagACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
EST: gi|71422924|gb|DR805897.1|DR805897
EST:     TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAA                         ACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
genomic: TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatat ... ctgtttgcagACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
EST: gi|71448089|gb|DR829139.1|DR829139
EST:     TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAA                         ACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
genomic: TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatat ... ctgtttgcagACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT
EST: gi|91051844|gb|EB162262.1|EB162262
EST:     TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAA                         ACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAAATGTGCT
genomic: TCAATGTACTGCTCACAAACCCGATTTGGGTTGTTGTTACACGAATGCAAgtgagcatat ... ctgtttgcagACTCACAGAAAGGCAAACAAACAGCAAAGACCTCAGGGTTTGAATTGTGCT