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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attttatggtcccatggagttctccctatttttcgatgatgcccatcttttggcagtaccttctttgtgtacacaataaatgggaggatattttctgcagGGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAAGTTGATGTTTATGATATGAAAAGCATGCTTATTCCTTGTGATGG

Basic information

species Zea mays
transcript GRMZM2G347808_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G347808_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os03g27930.1 (Oryza sativa), 3'ss of exon 9
attttatggtcccatggagt-tctccctatttttcgatgatgcccatcttttggcagtaccttctttgtgtacacaataaatgggagga-tattttctgcagGGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAAGTTGATGTTTATGATATGAAAAGCATGCTTATTCCTTGTGATGG
 |   | |       ||| | ||| ||| | ||   |||       | || | ||| ||  |  |||   ||  |      |||| | | | ||||   ||||||||||||| ||| |||||||||||||||||||| || |||||||||||||| ||||| |||||||| |||| ||||||||  |||||||||||
-tgacaggacgatgaggaatatcttcctttgttcacatgcctgttgttttcttgcattagttggttta-atatgcttactgtgggtgaactgttttacacagGGAGAAACTGTTTTTATGTCGCCTCCTTGGGGTGGACCAGACTATGCCAAAGTAGATGTATATGATATCAAAACCATGCTTAAGCCTTGTGATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211494128|gb|FK959674.1|FK959674
EST:     ACATAGATTTCATTGTAGGTGATTTTATACATATAGCTCCTCATCTGAAG                         GGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAA
genomic: ACATAGATTTCATTGTAGGTGATTTTATACATATAGCTCCTCATCTGAAGgtaatgcctt ... ttttctgcagGGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAA
EST: gi|211497012|gb|FK959681.1|FK959681
EST:     ACATAGATTTCATTGTAGGTGATTTTATACATATAGCTCCTCATCTGAAG                         GGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAA
genomic: ACATAGATTTCATTGTAGGTGATTTTATACATATAGCTCCTCATCTGAAGgtaatgcctt ... ttttctgcagGGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAA
EST: gi|211494134|gb|FK959680.1|FK959680
EST:     ACATAGATTTCATTGTAGGTGATTTTATACATATAGCTCCTCATCTGAAG                         GGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAA
genomic: ACATAGATTTCATTGTAGGTGATTTTATACATATAGCTCCTCATCTGAAGgtaatgcctt ... ttttctgcagGGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAA
EST: gi|71762989|gb|DR960926.1|DR960926
EST:     TTTATACATATAGCTCNTCATCTGAAG                         GGAGAAACTGCTTTCATGTCGCCTCCTGGGGGTGGCCCTGACTATGCCAAA
genomic: TTTATACATATAGCTCCTCATCTGAAGgtaatgcctt ... ttttctgcagGGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAA
EST: gi|211494133|gb|FK959679.1|FK959679
EST:     ACATAGATTTCATTGTAGGTGATTTTATACATATAGCTCCTCATCTGAAG                         GGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAA
genomic: ACATAGATTTCATTGTAGGTGATTTTATACATATAGCTCCTCATCTGAAGgtaatgcctt ... ttttctgcagGGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttttggcagtaccttctttgtgtacacaataaatgggaggatattttctgcagGGAGAAACTGCTTTCATGTCGCCTCCTTGGGGTGGCCCTGACTATGCCAAAGTTGATGTTTATGATATGAAAAGCATGCTTATTCCTTGTGATGG
                                           tattttct  CT-rich tract
                           acaataaat  TA-rich tract