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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGGGGCTTCCTGTTTCATTCAGCACAAGTAAAGTGgtcagttgctcacatagtgtgacaccatgttactgttccctaccggttccattgcttaattcctttatgcattgcag

Basic information

species Zea mays
transcript GRMZM2G347808_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G347808_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g27930.1 (Oryza sativa), 5'ss of exon 4
GCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGGGGCTTCCTGTTTCATTCAGCACAAGTAAAGTGgtcagttgctcac-atagtgtgacaccatgttactgttccctaccggttccattgcttaatt-cctttatgcattgcag
|| |||| |||||||||||||| ||||||  ||| || ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||   | |    |||  |   |||| |||| |   | |  ||   |   |  || ||   ||||  ||
GCGATTTGTTTGTTGAAGATTTAGAATTGTCCAACCTGATGGGTTCTTTGGGGCTTCCTGTTTCATTCAGCACAAGTAAAGAGgtaagt-gctcactgcactacttcactct-cgactgctccccagatgattaatctgtagctcacccttcgtcattatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76015416|gb|DT942586.1|DT942586
EST:     ATCTCATGGGTTCTTTGGGGCTTCCTGTTTCATTCAGCACAAGTAAAGTG                         AACAAGAACACATGCAACAAGGGAAAGAAAAAAGGAAGACAAGCACCGCTC
genomic: ATCTCATGGGTTCTTTGGGGCTTCCTGTTTCATTCAGCACAAGTAAAGTGgtcagttgct ... tgcattgcagAACAAGAACACATGCAACAAGGGAAAGAAAAAAGGAAGACAAGCACCGCTC