1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CAGAGCCAATTGCAAAGCATCATGCATCTCGTGTGGGTGCGGGAGTAATGATTGATTGTTTCACAGGAGTTGGTGGAAATGCCATCCAATTTGCCAAAAAgtacgtcaatgttatcttgcaattgagttatgtgatggtctaatgtatcatttgcttgaacacttcctgtttagtagcaactgttatttttcttatgtca...
species | Zea mays |
transcript | GRMZM2G347808_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATTGATTGTTTCACAGGAGTTGGTGGAAATGCCATCCAATTTGCCAAAAA GTGCAAGCATGTAATTGCAGTTGATATTGATCCACAAAAGATTGATTGCGCEST: gi|211497012|gb|FK959681.1|FK959681
genomic: ATTGATTGTTTCACAGGAGTTGGTGGAAATGCCATCCAATTTGCCAAAAAgtacgtcaat ... ccttttccagGTGCAAGCATGTAATTGCAGTTGATATTGATCCACAAAAGATTGATTGCGC
EST: ATTGATTGTTTCACAGGAGTTGGTGGAAATGCCATCCAATTTGCCAAAAA GTGCAAGCATGTAATTGCAGTTGATATTGATCCACAAAAGATTGATTGCGCEST: gi|211494134|gb|FK959680.1|FK959680
genomic: ATTGATTGTTTCACAGGAGTTGGTGGAAATGCCATCCAATTTGCCAAAAAgtacgtcaat ... ccttttccagGTGCAAGCATGTAATTGCAGTTGATATTGATCCACAAAAGATTGATTGCGC
EST: ATTGATTGTTTCACAGGAGTTGGTGGAAATGCCATCCAATTTGCCAAAAA GTGCAAGCATGTAATTGCAGTTGATATTGATCCACAAAAGATTGATTGCGCEST: gi|211494133|gb|FK959679.1|FK959679
genomic: ATTGATTGTTTCACAGGAGTTGGTGGAAATGCCATCCAATTTGCCAAAAAgtacgtcaat ... ccttttccagGTGCAAGCATGTAATTGCAGTTGATATTGATCCACAAAAGATTGATTGCGC
EST: ATTGATTGTTTCACAGGAGTTGGTGGAAATGCCATCCAATTTGCCAAAAA GTGCAAGCATGTAATTGCAGTTGATATTGATCCACAAAAGATTGATTGCGC
genomic: ATTGATTGTTTCACAGGAGTTGGTGGAAATGCCATCCAATTTGCCAAAAAgtacgtcaat ... ccttttccagGTGCAAGCATGTAATTGCAGTTGATATTGATCCACAAAAGATTGATTGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAGCCAATTGCAAAGCATCATGCATCTCGTGTGGGTGCGGGAGTAATGATTGATTGTTTCACAGGAGTTGGTGGAAATGCCATCCAATTTGCCAAAAAgtacgtcaatgttatcttgcaattgagttatgtgatggtctaatgtatcatttgcttgaacacttcctgtttagtagcaactgttatttttcttatgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA