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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acacataacattgtaatagtaaaatcaacaccagttattttacgttttcccttgtatgtcaaccgatttcttactgtgtatatgatctgtctatcaatagGCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGGGGCTTCCTGTTTCATTCAGCACAAGTAAAGTG

Basic information

species Zea mays
transcript GRMZM2G347808_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G347808_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g27930.1 (Oryza sativa), 3'ss of exon 3
acacataacattgtaatagtaaaatcaacaccagttattttacgttttcccttgtatgtcaaccgat-ttcttactgtgtatatgatctgtc-----tatcaatagGCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGGGGCTTCCTGTTTCATTCAGCACAAGTAAAGTG
    | || ||  | ||   | |||  | |    | |||||     ||  |    || ||    ||| || || |||||| | ||||   ||     ||||||||||| |||| |||||||||||||| ||||||  ||| || ||||||||||||||||||||||||||||||||||||||||||| |
----aaaagatcattatttcataat--atagtgttaattttgtaagtttgcagcaatttcttatgatattgtttctgtgtttgtgatgcttctatggtatcaatagGCGATTTGTTTGTTGAAGATTTAGAATTGTCCAACCTGATGGGTTCTTTGGGGCTTCCTGTTTCATTCAGCACAAGTAAAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76015416|gb|DT942586.1|DT942586
EST:     ATAAAACATGCAATGAAGCATCCAATAGCACTGACAAAG                         GCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGG
genomic: ATAAAACATGCAATGAAGCATCCAATAGCACTGACAAAGgttagatgta ... ctatcaatagGCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcccttgtatgtcaaccgatttcttactgtgtatatgatctgtctatcaatagGCCATTTCTTTGTTGAAGATTTGGAATTGGTCAATCTCATGGGTTCTTTGGGGCTTCCTGTTTCATTCAGCACAAGTAAAGTG
                      ttcttac  putative branch site (score: 2)
                                        tctgtct  putative PPT
                    atttctta  TA-rich tract