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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGATAGCTTCAAGAGTAGTGATGTTTCTTCCTCGCAACATTGACCTAAACCAATTGGCGGACATGTCCTTGTCTGTGGATCCCCCGTGGGCAGTTGAGgtaagcccatttttgctgattttgtgccaagctgacgtttcctatagatgtcacagtggtctctctctctgcag

Basic information

species Zea mays
transcript GRMZM2G347808_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G347808_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g27930.1 (Oryza sativa), 5'ss of exon 11
CATGATAGCTTCAAGAGTAGTGATGTTTCTTCCTCGCAACATTGACCTAAACCAATTGGCGGACATGTCCTTGTCTGTGGATCCCCCGTGGGCAGTTGAGgtaagcccatttttgctgattttgtgccaagctgacgtttcctatagatgtcacagtggtctctctctctgcag-------------------------------------------------------------------------------------------------------------------
    || ||||| || || ||||||||||||||||| |||||||||| ||| |||||||| ||||||| | |||| || ||||| || |||||||||||||||   ||||||    |||||| |||   ||||||| ||  | | | | |  |  || |   | || | || ||                                                                                                                   
ATCAATCGCTTCGAGGGTGGTGATGTTTCTTCCTCGTAACATTGACCAAAATCAATTGGCAGACATGTGCCTGTCAGTTGATCCTCCTTGGGCAGTTGAGgtatatccatttcctgtgattt-gtgtatagctgac-ttggccacaaaaga-agggttgatgcact-tgtggagcttaattgtttatccatggtcttttcttctgatgcacttacttgtggaacttaattgtttatccatggtcttttcttctgatgctaagtggtcttttcctattactttctggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32824820|gb|CD964542.1|CD964542
EST:     GATCTCCCGTGGGCAGTTGAG                         GTCGAGAAGAACTTCCTCAACGGAAAGCTGAAAGCCATAACAGCTTACTTT
genomic: GATCCCCCGTGGGCAGTTGAGgtaagcccat ... ctctctgcagGTCGAGAAGAACTTCCTCAACGGAAAGCTGAAAGCCATAACAGCTTACTTT
EST: gi|76015415|gb|DT942585.1|DT942585
EST:     ACCAATTGGCGGACATGTCCTTGTCTGTGGATCCCCCGTGGGCAGTTGAG                         GTCGAGAAGAACTTCCTCAACGGAAAGCTGAAAGCCATAACAGCTTACTTT
genomic: ACCAATTGGCGGACATGTCCTTGTCTGTGGATCCCCCGTGGGCAGTTGAGgtaagcccat ... ctctctgcagGTCGAGAAGAACTTCCTCAACGGAAAGCTGAAAGCCATAACAGCTTACTTT
EST: gi|89248734|gb|DY620520.1|DY620520
EST:     ACCAATTGGCGGACATGTCCTTGTCTGTGGATCCCCCGTGGGCAGTTGAG                         GTCGAGAAGAACTTCCTCAACGGAAAGCTGAAAGCCATAACAGCTTACTTT
genomic: ACCAATTGGCGGACATGTCCTTGTCTGTGGATCCCCCGTGGGCAGTTGAGgtaagcccat ... ctctctgcagGTCGAGAAGAACTTCCTCAACGGAAAGCTGAAAGCCATAACAGCTTACTTT
EST: gi|211522968|gb|FL454638.1|FL454638
EST:     GTGGGCAGTTGAG                         GTCGAGAAGAACTTCCTCAACGGAAAGCTGAAAGCCATAACAGCTTACTTT
genomic: GTGGGCAGTTGAGgtaagcccat ... ctctctgcagGTCGAGAAGAACTTCCTCAACGGAAAGCTGAAAGCCATAACAGCTTACTTT
EST: gi|71762989|gb|DR960926.1|DR960926
EST:     ACCAATTGGCGGACATGTCCTTGTCTGTGGATCCCCCGTGGGCAGTTGAG                         GTCGAGAAGAACTTCCTCAACGGAAAGCTGAAAGCCATAACAGCTTACTTT
genomic: ACCAATTGGCGGACATGTCCTTGTCTGTGGATCCCCCGTGGGCAGTTGAGgtaagcccat ... ctctctgcagGTCGAGAAGAACTTCCTCAACGGAAAGCTGAAAGCCATAACAGCTTACTTT
EST: gi|76020625|gb|DT947795.1|DT947795
EST:     ACCAATTGGCGGACATGTCCTTGTCTGTGGATCCCCCGTGGGCAGTTGAG                         GTCGAGAAGAACTTCCTCAACGGAAAGCTGAAAGCCATAACAGCTTACTTT
genomic: ACCAATTGGCGGACATGTCCTTGTCTGTGGATCCCCCGTGGGCAGTTGAGgtaagcccat ... ctctctgcagGTCGAGAAGAACTTCCTCAACGGAAAGCTGAAAGCCATAACAGCTTACTTT
EST: gi|60394235|gb|DN227105.1|DN227105
EST:     ACCAATTGGCGGACATGTCCTTGTCTGTGGATCCCCCGTGGGCAGTTGAG                         GTCGAGAAGAACTTCCTCAACGGAAAGCTGAAAGCCATAACAGCTTACTTT
genomic: ACCAATTGGCGGACATGTCCTTGTCTGTGGATCCCCCGTGGGCAGTTGAGgtaagcccat ... ctctctgcagGTCGAGAAGAACTTCCTCAACGGAAAGCTGAAAGCCATAACAGCTTACTTT
EST: gi|76020624|gb|DT947794.1|DT947794
EST:     ACCAATTGGCGGACATGTCCTTGTCTGTGGATCCCCCGTGGGCAGTTGAG                         GTCGAGAAGAACTTCCTCAACGGAAAGCTGAAAGCCATAACAGCTTACTTT
genomic: ACCAATTGGCGGACATGTCCTTGTCTGTGGATCCCCCGTGGGCAGTTGAGgtaagcccat ... ctctctgcagGTCGAGAAGAACTTCCTCAACGGAAAGCTGAAAGCCATAACAGCTTACTTT