Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttagttgtttgcagtgtaggtggatttattttatgttatcaatgtttcttctacagtactaagactattgttccacattaactatgtctccttttccagGTGCAAGCATGTAATTGCAGTTGATATTGATCCACAAAAGATTGATTGCGCGCATCATAATGCATCCATTTATGGAGTAAATGATCACATAGATTTCATT

Basic information

species Zea mays
transcript GRMZM2G347808_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G347808_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g27930.1 (Oryza sativa), 3'ss of exon 8
cttagttgtttgcagtgtaggtggatttattttatgttatcaa-tgtttcttc-tacagtactaagactattgttccacattaactatgtctccttttccagGTGCAAGCATGTAATTGCAGTTGATATTGATCCACAAAAGATTGATTGCGCGCATCATAATGCATCCATTTATGGAGTAAATGATCACATAGATTTCATT
      ||  |       |      |||   |   |  |||   ||||||||  | |||  | ||    || |||  ||||||   |   |   ||||| ||||||| |||||| || ||  ||||||||||||| |||||||||||||||||||| ||||||||| |  | ||||||||| ||||||| ||||| ||| ||
tgccactgcctatt-cacaatcatgtttggatagggaaatcctctgtttcttgatgcagctccaactacatggttttacattagtaacaccattttttc-agGTGCAGGCATGTTATCGCTATTGATATTGATCCCCAAAAGATTGATTGCGCGCAGCATAATGCAACTGTCTATGGAGTACATGATCATATAGACTTCGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211494128|gb|FK959674.1|FK959674
EST:     ATTGATTGTTTCACAGGAGTTGGTGGAAATGCCATCCAATTTGCCAAAAA                         GTGCAAGCATGTAATTGCAGTTGATATTGATCCACAAAAGATTGATTGCGC
genomic: ATTGATTGTTTCACAGGAGTTGGTGGAAATGCCATCCAATTTGCCAAAAAgtacgtcaat ... ccttttccagGTGCAAGCATGTAATTGCAGTTGATATTGATCCACAAAAGATTGATTGCGC
EST: gi|211497012|gb|FK959681.1|FK959681
EST:     ATTGATTGTTTCACAGGAGTTGGTGGAAATGCCATCCAATTTGCCAAAAA                         GTGCAAGCATGTAATTGCAGTTGATATTGATCCACAAAAGATTGATTGCGC
genomic: ATTGATTGTTTCACAGGAGTTGGTGGAAATGCCATCCAATTTGCCAAAAAgtacgtcaat ... ccttttccagGTGCAAGCATGTAATTGCAGTTGATATTGATCCACAAAAGATTGATTGCGC
EST: gi|211494134|gb|FK959680.1|FK959680
EST:     ATTGATTGTTTCACAGGAGTTGGTGGAAATGCCATCCAATTTGCCAAAAA                         GTGCAAGCATGTAATTGCAGTTGATATTGATCCACAAAAGATTGATTGCGC
genomic: ATTGATTGTTTCACAGGAGTTGGTGGAAATGCCATCCAATTTGCCAAAAAgtacgtcaat ... ccttttccagGTGCAAGCATGTAATTGCAGTTGATATTGATCCACAAAAGATTGATTGCGC
EST: gi|211494133|gb|FK959679.1|FK959679
EST:     ATTGATTGTTTCACAGGAGTTGGTGGAAATGCCATCCAATTTGCCAAAAA                         GTGCAAGCATGTAATTGCAGTTGATATTGATCCACAAAAGATTGATTGCGC
genomic: ATTGATTGTTTCACAGGAGTTGGTGGAAATGCCATCCAATTTGCCAAAAAgtacgtcaat ... ccttttccagGTGCAAGCATGTAATTGCAGTTGATATTGATCCACAAAAGATTGATTGCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttctacagtactaagactattgttccacattaactatgtctccttttccagGTGCAAGCATGTAATTGCAGTTGATATTGATCCACAAAAGATTGATTGCGCGCATCATAATGCATCCATTTATGGAGTAAATGATCACATAGATTTCATT
                               cattaac  putative branch site (score: 2)
                                     ctatgtctccttttcc  CT-rich tract
                                attaactat  TA-rich tract