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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGAAGCGGCTTGGCCAAGTTCTTTTTGTCGATGCTCCATTTGTTTTTCAACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTGgtatgctctccctctcccttaggttagcgcttcatagaacgatatggaacgatatggagaaccttatagtctactgctatgttgcccctgctag

Basic information

species Zea mays
transcript GRMZM2G156218_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G156218_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g21630.1 (Oryza sativa), 5'ss of exon 5
CCCGAAGCGGCTTGGCCAAGTTCTTTTTGTCGATGCTCCATTTGTTTTTCAACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTGgtatgctctccctctcccttaggttagcgcttcatagaacgatatggaacgatatggagaaccttatagtctactgctat-gttgcccctgctag----
||| |||||||| || |||||||||||||| ||||| || ||||| ||||| || ||||||||| ||||||||||| ||||||||  |||||| || |||||  ||| ||||||||           | || ||||||| | |||  | | |   | |     |  ||  |     || | |||   |||||       
CCCAAAGCGGCTCGGGCAAGTTCTTTTTGTTGATGCACCGTTTGTGTTTCAGCCGATGTGGCAGCTTGTTAAACCTTTGTTGAAACAATATGCATCACTGgtcagct-tccctctctaccc------ctctgcatagaa-gttatttagcaaatggcacttaatcttaccccttcactgttgttattcctgcacataag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71420465|gb|DR805107.1|DR805107
EST:     AACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTG                         GTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA
genomic: AACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTGgtatgctctc ... cccctgctagGTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA
EST: gi|71759265|gb|DR957202.1|DR957202
EST:     AACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTG                         GTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA
genomic: AACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTGgtatgctctc ... cccctgctagGTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA
EST: gi|74234555|gb|DT642469.1|DT642469
EST:     AACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTG                         GTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA
genomic: AACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTGgtatgctctc ... cccctgctagGTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA
EST: gi|71445380|gb|DR826430.1|DR826430
EST:     AACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTG                         GTAAGATTTTGTGATACCGAGACTGTGAGGGAGGAATACTTCAAAGAAGAA
genomic: AACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTGgtatgctctc ... cccctgctagGTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA
EST: gi|148937334|gb|EC881515.2|EC881515
EST:     AACCAATGTGGCAGGTTGTTTAACCTCTGTTGAAATCATATGCCTCCCTG                         GTAAGATTTTGTGATACCGAGACTGTGAGGAGGGAATAC
genomic: AACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTGgtatgctctc ... cccctgctagGTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATAC
EST: gi|60356139|gb|DN223112.1|DN223112
EST:     GCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTG                         GTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA
genomic: GCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTGgtatgctctc ... cccctgctagGTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA
EST: gi|71445381|gb|DR826431.1|DR826431
EST:     AACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTG                         GTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA
genomic: AACCAATGTGGCAGGTTGTTAAACCTCTGTTGAAATCATATGCCTCCCTGgtatgctctc ... cccctgctagGTAAGATTTTGTGATACCGAGACTGTGAGGAAGGAATACTTCAAAGAAGAA